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Update README.md
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emma0925 authored Apr 12, 2024
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Expand Up @@ -160,7 +160,7 @@ To initiate the Automated Data Extraction process, follow these steps:
split -l $BATCH_SIZE "$GENE_ID_FILE" ./gene_ids/batch_ # ./gene_ids/batch_ is the default folder where the divided gene_ids txt file will be
```
4. **Run the Shell Script:** Execute the `batch_data_retrieval.sh` script. This will split the gene ID list into batches, create sbatch scripts for each batch, and submit them for processing.
4. **Run the Shell Script:** Execute the `get_connectome_for_all.sh` script. This will split the gene ID list into batches, create sbatch scripts for each batch, and submit them for processing.
```bash
./get_connectome_for_all.sh
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