{lib}[foss/2022b] synthcity v0.2.10, DECAF-synthetic-data v0.1.6, PyTorch-Lightning v1.8.4, ... w/ PyTorch 1.13.1 #21141

pavelToman · 2024-08-07T10:58:49Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#357

requires:

…ata-0.1.6-foss-2022b.eb, PyTorch-Lightning-1.8.4-foss-2022b.eb, torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb, fastai-2.7.15-foss-2022b.eb, spaCy-3.7.4-foss-2022b.eb, Optuna-3.5.0-foss-2022b.eb, redis-py-5.0.1-GCCcore-12.2.0.eb, Redis-7.2.3-GCCcore-12.2.0.eb, lifelines-0.27.7-foss-2022b.eb, SHAP-0.43.0-foss-2022b.eb, XGBoost-1.7.2-foss-2022b.eb, imbalanced-learn-0.12.3-gfbf-2022b.eb, pycodestyle-2.11.1-foss-2022b.eb

pavelToman · 2024-08-10T08:58:48Z

@boegelbot please test @ generoso

boegelbot · 2024-08-10T09:00:05Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14047

Test results coming soon (I hope)...

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boegelbot · 2024-08-10T10:01:08Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/7ffb29b1f5448d499df95453a3f5e2b8 for a full test report.

pavelToman · 2024-08-13T15:33:19Z

@boegelbot please test @ generoso

boegelbot · 2024-08-13T15:35:12Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14062

Test results coming soon (I hope)...

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boegelbot · 2024-08-13T16:31:15Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/6bb3a758427b32b0f0850d7eec17b857 for a full test report.

easybuild/easyconfigs/s/synthcity/synthcity-0.2.10-foss-2022b.eb

…eb - SciPy typo Co-authored-by: Kenneth Hoste <[email protected]>

pavelToman · 2024-08-19T10:33:28Z

@boegelbot please test @ generoso

boegelbot · 2024-08-19T10:35:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14083

Test results coming soon (I hope)...

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boegelbot · 2024-08-19T11:38:26Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/37618cdce775866b17a42df05c5039e2 for a full test report.

pavelToman · 2024-08-19T12:35:51Z

@boegelbot please test @ generoso

boegelbot · 2024-08-19T12:40:05Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14084

Test results coming soon (I hope)...

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boegelbot · 2024-08-19T22:49:26Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/5ee4f4ea5bd257d0fde202ff7f27cde5 for a full test report.

pavelToman · 2024-08-20T08:29:27Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-08-20T08:30:07Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4695

Test results coming soon (I hope)...

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boegelbot · 2024-08-20T09:20:14Z

Test report by @boegelbot
FAILED
Build succeeded for 22 out of 24 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/14c776f9728558c892fede7f6852441a for a full test report.

boegel · 2024-08-20T13:13:59Z

@pavelToman On jsc-zen3, it's failing for python-igraph-0.10.6-foss-2022b.eb with:

AttributeError: Plotting not available; please install pycairo or cairocffi

cairo dependency is missing in python-igraph-0.10.6-foss-2022b.eb, please open a separate PR to fix that.

This problem didn't happen on generoso because there's a system-wide installation of cairo there that's being picked up...

Seems on some systems (generoso) it picked system cairo - so it did not fail easybuilders#21141 (comment)

pavelToman · 2024-08-20T13:57:46Z

@pavelToman On jsc-zen3, it's failing for python-igraph-0.10.6-foss-2022b.eb with:
AttributeError: Plotting not available; please install pycairo or cairocffi
cairo dependency is missing in python-igraph-0.10.6-foss-2022b.eb, please open a separate PR to fix that.

This problem didn't happen on generoso because there's a system-wide installation of cairo there that's being picked up...

PR created:

Add missing cairo dependency for python-igraph v0.10.6 #21211

boegel · 2024-08-20T16:07:19Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-08-20T20:59:19Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/d6b19de9bf5f0728746b1c2fa42f7afc for a full test report.

boegelbot · 2024-08-21T06:54:26Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/5601c679d5fdfa1f8cb3d4b545a2b4ab for a full test report.

boegel · 2024-08-28T13:33:24Z

Consistent test failures on both systems:

=========================== short test summary info ============================
FAILED plugins/privacy/test_decaf.py::test_plugin_generate[test_plugin0] - Ru...
FAILED plugins/privacy/test_decaf.py::test_plugin_generate[test_plugin1] - Ru...
FAILED plugins/privacy/test_decaf.py::test_plugin_generate[test_plugin2] - Ru...
FAILED plugins/privacy/test_decaf.py::test_get_dag[d-struct] - RuntimeError: ...
= 4 failed, 2155 passed, 13 skipped, 103 deselected, 2 xfailed, 1629 warnings in 14104.32s (3:55:04) =

Underlying problem isn't revealed in partial log though...

boegel · 2024-08-29T09:28:52Z

I couldn't trigger the test failures when triggering the installation manually on jsc-zen3, but that was in an interactive job with 16 cores, so more memory, that may explain why the tests passed...

I'll try to confirm that.

boegel · 2024-08-29T13:26:05Z

Even in a 4-core job, I can't reproduce the failing tests interactively...

Trying again, but making sure the full log is kept.

boegel · 2024-08-29T13:26:42Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--tmp-logdir $HOME/synthcity-pr21141 --disable-cleanup-tmpdir"

boegelbot · 2024-08-29T13:30:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21141 EB_ARGS="--tmp-logdir $HOME/synthcity-pr21141 --disable-cleanup-tmpdir" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4773

Test results coming soon (I hope)...

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boegelbot · 2024-08-29T17:37:39Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/28abf8de486ae7ceff370b07ae78aea4 for a full test report.

boegel · 2024-08-29T20:06:16Z

More info on first test failure shows that the tests are sensitive to running in a Slurm job environment:

=================================== FAILURES ===================================
______________________ test_plugin_generate[test_plugin0] ______________________

test_plugin = <synthcity.plugins.privacy.plugin_decaf.DECAFPlugin object at 0x1468bf707c70>

    @pytest.mark.parametrize(
        "test_plugin", generate_fixtures(plugin_name, plugin, plugin_args)
    )
    @pytest.mark.skipif(sys.platform != "linux", reason="Linux only for faster results")
    def test_plugin_generate(test_plugin: Plugin) -> None:
        X = pd.DataFrame(load_iris()["data"])
>       test_plugin.fit(GenericDataLoader(X))

plugins/privacy/test_decaf.py:110:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
pydantic/decorator.py:40: in pydantic.decorator.validate_arguments.validate.wrapper_function
    ???
pydantic/decorator.py:134: in pydantic.decorator.ValidatedFunction.call
    ???
pydantic/decorator.py:206: in pydantic.decorator.ValidatedFunction.execute
    ???
/tmp/eb-01mfc9ba/tmpouwj1neq/lib/python3.10/site-packages/synthcity/plugins/core/plugin.py:256: in fit
    output = self._fit(X, *args, **kwargs)
/tmp/eb-01mfc9ba/tmpouwj1neq/lib/python3.10/site-packages/synthcity/plugins/privacy/plugin_decaf.py:432: in _fit
    trainer = pl.Trainer(
/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/1.8.4-foss-2022b/lib/python3.10/site-packages/pytorch_lightning/utilities/argparse.py:340: in insert_env_defaults
    return fn(self, **kwargs)
/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/1.8.4-foss-2022b/lib/python3.10/site-packages/pytorch_lightning/trainer/trainer.py:414: in __init__
    self._accelerator_connector = AcceleratorConnector(
/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/1.8.4-foss-2022b/lib/python3.10/site-packages/pytorch_lightning/trainer/connectors/accelerator_connector.py:211: in __init__
    self.cluster_environment: ClusterEnvironment = self._choose_and_init_cluster_environment()
/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/1.8.4-foss-2022b/lib/python3.10/site-packages/pytorch_lightning/trainer/connectors/accelerator_connector.py:566: in _choose_and_init_cluster_environment
    return env_type()
/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/1.8.4-foss-2022b/lib/python3.10/site-packages/lightning_lite/plugins/environments/slurm.py:49: in __init__
    self._validate_srun_variables()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

    @staticmethod
    def _validate_srun_variables() -> None:
        """Checks for conflicting or incorrectly set variables set through `srun` and raises a useful error
        message.

        Right now, we only check for the most common user errors. See `the srun docs
        <https://slurm.schedmd.com/srun.html>`_ for a complete list of supported srun variables.
        """
        ntasks = int(os.environ.get("SLURM_NTASKS", "1"))
        if ntasks > 1 and "SLURM_NTASKS_PER_NODE" not in os.environ:
>           raise RuntimeError(
                f"You set `--ntasks={ntasks}` in your SLURM bash script, but this variable is not supported."
                f" HINT: Use `--ntasks-per-node={ntasks}` instead."
            )
E           RuntimeError: You set `--ntasks=8` in your SLURM bash script, but this variable is not supported. HINT: Use `--ntasks-per-node=8` instead.

Other 3 failures are basically exactly the same...

It seems like this is caused by the bot using sbatch --ntasks=..., should be using --ntasks-per-node instead according to the synthcity tests?

pavelToman · 2024-10-18T09:42:17Z

@boegelbot please test @ generoso

boegelbot · 2024-10-18T09:45:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14527

Test results coming soon (I hope)...

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boegelbot · 2024-10-18T20:13:41Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/b5fe1713f9251e2ee34601378d2eaa44 for a full test report.

pavelToman · 2024-10-21T08:51:52Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-21T09:00:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5140

Test results coming soon (I hope)...

- notification for comment with ID 2426028263 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-21T13:24:41Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/8d058ee2c1745e99f03d1d2cf0c280bd for a full test report.

boegel · 2024-10-24T06:39:05Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-24T06:40:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21141 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21141 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5150

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2024-10-24T11:16:22Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/040c6fda89fed849b014c79f6b4ca168 for a full test report.

…asyconfigs into 20240807125845_new_pr_synthcity0210

boegel · 2024-11-15T13:03:17Z

Test report by @boegel
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
node3143.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/63b8d29ba3685f1f0165f3fbbe39589b for a full test report.

github-actions · 2024-11-16T11:39:36Z

Updated software `fastai-2.7.15-foss-2022b.eb`

Diff against fastai-2.7.10-foss-2022a.eb

easybuild/easyconfigs/f/fastai/fastai-2.7.10-foss-2022a.eb

diff --git a/easybuild/easyconfigs/f/fastai/fastai-2.7.10-foss-2022a.eb b/easybuild/easyconfigs/f/fastai/fastai-2.7.15-foss-2022b.eb
index 50b4ecd47f..20e8dcdf96 100644
--- a/easybuild/easyconfigs/f/fastai/fastai-2.7.10-foss-2022a.eb
+++ b/easybuild/easyconfigs/f/fastai/fastai-2.7.15-foss-2022b.eb
@@ -1,39 +1,39 @@
 easyblock = 'PythonBundle'
 
 name = 'fastai'
-version = '2.7.10'
+version = '2.7.15'
 
 homepage = 'https://www.fast.ai/'
 description = """The fastai deep learning library."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 use_pip = True
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('PyTorch', '1.12.0'),
-    ('torchvision', '0.13.1'),
-    ('matplotlib', '3.5.2'),
-    ('SciPy-bundle', '2022.05'),
+    ('Python', '3.10.8'),
+    ('PyTorch', '1.13.1'),
+    ('matplotlib', '3.7.0'),
+    ('SciPy-bundle', '2023.02'),
     ('PyYAML', '6.0'),
-    ('Pillow', '9.1.1'),
-    ('scikit-learn', '1.1.2'),
-    ('spaCy', '3.4.4'),
+    ('Pillow', '9.4.0'),
+    ('scikit-learn', '1.2.1'),
+    ('spaCy', '3.7.4'),
+    ('torchvision', '0.14.1'),
 ]
 
 exts_list = [
     ('fastdownload', '0.0.7', {
         'checksums': ['20507edb8e89406a1fbd7775e6e2a3d81a4dd633dd506b0e9cf0e1613e831d6a'],
     }),
-    ('fastcore', '1.5.27', {
-        'checksums': ['c6b66b35569d17251e25999bafc7d9bcdd6446c1e710503c08670c3ff1eef271'],
+    ('fastcore', '1.5.54', {
+        'checksums': ['3f23dfadd77428be99558fdad66bf04c79a9c626e694c7404ede816ed8372987'],
     }),
     ('fastprogress', '1.0.3', {
         'checksums': ['7a17d2b438890f838c048eefce32c4ded47197ecc8ea042cecc33d3deb8022f5'],
     }),
     (name, version, {
-        'checksums': ['ccef6a185ae3a637efc9bcd9fea8e48b75f454d0ebad3b6df426f22fae20039d'],
+        'checksums': ['f2cc20fd18cdf5ec738cc56d29d54de75887d48ad15f9d35cf50c38d3a856923'],
     }),
 ]

Updated software `HF-Datasets-2.14.4-gfbf-2022b.eb`

Diff against HF-Datasets-2.18.0-gfbf-2023a.eb

easybuild/easyconfigs/h/HF-Datasets/HF-Datasets-2.18.0-gfbf-2023a.eb

diff --git a/easybuild/easyconfigs/h/HF-Datasets/HF-Datasets-2.18.0-gfbf-2023a.eb b/easybuild/easyconfigs/h/HF-Datasets/HF-Datasets-2.14.4-gfbf-2022b.eb
index 6b7fb2bd5b..e92ec85db9 100644
--- a/easybuild/easyconfigs/h/HF-Datasets/HF-Datasets-2.18.0-gfbf-2023a.eb
+++ b/easybuild/easyconfigs/h/HF-Datasets/HF-Datasets-2.14.4-gfbf-2022b.eb
@@ -1,7 +1,7 @@
 easyblock = "PythonBundle"
 
 name = 'HF-Datasets'
-version = '2.18.0'
+version = '2.14.4'
 
 homepage = 'https://github.com/huggingface/datasets'
 description = """
@@ -9,43 +9,35 @@ The largest hub of ready-to-use datasets for ML models with fast, easy-to-use an
 data manipulation tools.
 """
 
-toolchain = {'name': 'gfbf', 'version': '2023a'}
+toolchain = {'name': 'gfbf', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Python-bundle-PyPI', '2023.06'),  # for fsspec
-    ('SciPy-bundle', '2023.07'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
     ('aiohttp', '3.8.5'),
     ('dill', '0.3.7'),
-    ('Arrow', '14.0.1'),
+    ('Arrow', '11.0.0'),
     ('PyYAML', '6.0'),
-    ('tqdm', '4.66.1'),
-    ('python-xxhash', '3.4.1'),
+    ('tqdm', '4.64.1'),
+    ('python-xxhash', '3.2.0'),
 ]
 
 use_pip = True
 sanity_pip_check = True
 
 exts_list = [
+    ('pyarrow_hotfix', '0.6', {
+        'checksums': ['79d3e030f7ff890d408a100ac16d6f00b14d44a502d7897cd9fc3e3a534e9945'],
+    }),
     ('multiprocess', '0.70.15', {
         'checksums': ['f20eed3036c0ef477b07a4177cf7c1ba520d9a2677870a4f47fe026f0cd6787e'],
     }),
-    ('huggingface-hub', '0.21.4', {
+    ('huggingface-hub', '0.15.1', {
         'sources': ['huggingface_hub-%(version)s.tar.gz'],
-        'checksums': ['e1f4968c93726565a80edf6dc309763c7b546d0cfe79aa221206034d50155531'],
+        'checksums': ['a61b7d1a7769fe10119e730277c72ab99d95c48d86a3d6da3e9f3d0f632a4081'],
     }),
     ('datasets', version, {
-        'patches': [
-            'datasets-2.18.0_use-patched-pyarrow.patch',
-            'datasets-2.18.0_add-option-to-use-softfilelock.patch',
-        ],
-        'checksums': [
-            {'datasets-2.18.0.tar.gz': 'cdf8b8c6abf7316377ba4f49f9589a4c74556d6b481afd0abd2284f3d69185cb'},
-            {'datasets-2.18.0_use-patched-pyarrow.patch':
-             'a42f23c94f3f4935aae7a01aebd04bacae518537ecb674efeb94d5af7a296061'},
-            {'datasets-2.18.0_add-option-to-use-softfilelock.patch':
-             '18f3a3f3735afcbf9f4c19a2bd5bdb7221ca5ad13a36748df42404764a8cd0fc'},
-        ],
+        'checksums': ['ef29c2b5841de488cd343cfc26ab979bff77efa4d2285af51f1ad7db5c46a83b'],
     }),
 ]

Updated software `imbalanced-learn-0.12.3-gfbf-2022b.eb`

Diff against imbalanced-learn-0.12.3-gfbf-2023a.eb

easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.12.3-gfbf-2023a.eb

diff --git a/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.12.3-gfbf-2023a.eb b/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.12.3-gfbf-2022b.eb
index 4881e78a0e..10e219da60 100644
--- a/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.12.3-gfbf-2023a.eb
+++ b/easybuild/easyconfigs/i/imbalanced-learn/imbalanced-learn-0.12.3-gfbf-2022b.eb
@@ -7,11 +7,11 @@ homepage = 'https://github.com/scikit-learn-contrib/imbalanced-learn'
 description = """imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in
  datasets showing strong between-class imbalance."""
 
-toolchain = {'name': 'gfbf', 'version': '2023a'}
+toolchain = {'name': 'gfbf', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('scikit-learn', '1.3.1'),
+    ('Python', '3.10.8'),
+    ('scikit-learn', '1.2.1'),
 ]
 
 sanity_pip_check = True

Updated software `lifelines-0.27.7-foss-2022b.eb`

Diff against lifelines-0.27.4-foss-2022a.eb

easybuild/easyconfigs/l/lifelines/lifelines-0.27.4-foss-2022a.eb

diff --git a/easybuild/easyconfigs/l/lifelines/lifelines-0.27.4-foss-2022a.eb b/easybuild/easyconfigs/l/lifelines/lifelines-0.27.7-foss-2022b.eb
index c300ce4d3a..69b35bc787 100644
--- a/easybuild/easyconfigs/l/lifelines/lifelines-0.27.4-foss-2022a.eb
+++ b/easybuild/easyconfigs/l/lifelines/lifelines-0.27.7-foss-2022b.eb
@@ -1,25 +1,25 @@
 easyblock = 'PythonBundle'
 
 name = 'lifelines'
-version = '0.27.4'
+version = '0.27.7'
 
 homepage = "https://lifelines.readthedocs.io/en/latest/"
 description = """lifelines is a complete survival analysis library, written in pure Python."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('SciPy-bundle', '2022.05'),
-    ('matplotlib', '3.5.2'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
+    ('matplotlib', '3.7.0'),
 ]
 
-sanity_pip_check = True
 use_pip = True
+sanity_pip_check = True
 
 exts_list = [
-    ('wrapt', '1.14.1', {
-        'checksums': ['380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d'],
+    ('wrapt', '1.16.0', {
+        'checksums': ['5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d'],
     }),
     ('astor', '0.8.1', {
         'checksums': ['6a6effda93f4e1ce9f618779b2dd1d9d84f1e32812c23a29b3fff6fd7f63fa5e'],
@@ -27,17 +27,18 @@ exts_list = [
     ('interface_meta', '1.3.0', {
         'checksums': ['8a4493f8bdb73fb9655dcd5115bc897e207319e36c8835f39c516a2d7e9d79a1'],
     }),
-    ('autograd', '1.5', {
-        'checksums': ['d80bd225154d1db13cb4eaccf7a18c358be72092641b68717f96fcf1d16acd0b'],
+    ('autograd', '1.6.2', {
+        'checksums': ['8731e08a0c4e389d8695a40072ada4512641c113b6cace8f4cfbe8eb7e9aedeb'],
     }),
     ('autograd-gamma', '0.5.0', {
         'checksums': ['f27abb7b8bb9cffc8badcbf59f3fe44a9db39e124ecacf1992b6d952934ac9c4'],
     }),
-    ('formulaic', '0.4.0', {
-        'checksums': ['087950518c53a2491deb52b8ddd66833f953882e517a42e476c007cc8f6892c5'],
+    ('formulaic', '1.0.1', {
+        'checksums': ['64dd7992a7aa5bbceb1e40679d0f01fc6f0ba12b7d23d78094a88c2edc68fba1'],
     }),
     (name, version, {
-        'checksums': ['62f7e911a64c8f723eef4207174fb1df39a94f79eca557cdf53d310eb6be132f'],
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['44d60171f5abe85506b55cdf754b4ba769f61a5f8f18a9d05491009c6cee5803'],
     }),
 ]

Updated software `Optuna-3.5.0-foss-2022b.eb`

Diff against Optuna-3.6.1-foss-2023b.eb

easybuild/easyconfigs/o/Optuna/Optuna-3.6.1-foss-2023b.eb

diff --git a/easybuild/easyconfigs/o/Optuna/Optuna-3.6.1-foss-2023b.eb b/easybuild/easyconfigs/o/Optuna/Optuna-3.5.0-foss-2022b.eb
index 35dec40e23..26185a5afe 100644
--- a/easybuild/easyconfigs/o/Optuna/Optuna-3.6.1-foss-2023b.eb
+++ b/easybuild/easyconfigs/o/Optuna/Optuna-3.5.0-foss-2022b.eb
@@ -1,7 +1,7 @@
 easyblock = 'PythonBundle'
 
 name = 'Optuna'
-version = '3.6.1'
+version = '3.5.0'
 
 homepage = "https://optuna.org/"
 description = """Optuna is an automatic hyperparameter optimization software framework,
@@ -11,17 +11,17 @@ with Optuna enjoys high modularity, and the user of Optuna can dynamically
 construct the search spaces for the hyperparameters."""
 
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('PyYAML', '6.0.1'),
-    ('SciPy-bundle', '2023.11'),
-    ('tqdm', '4.66.2'),
-    ('matplotlib', '3.8.2'),  # optional
-    ('plotly.py', '5.18.0'),  # optional
-    ('redis-py', '5.0.9'),  # optional
-    ('scikit-learn', '1.4.0'),  # optional
+    ('Python', '3.10.8'),
+    ('PyYAML', '6.0'),
+    ('SciPy-bundle', '2023.02'),
+    ('tqdm', '4.64.1'),
+    ('matplotlib', '3.7.0'),  # optional
+    ('plotly.py', '5.13.1'),  # optional
+    ('redis-py', '5.0.1'),  # optional
+    ('scikit-learn', '1.2.1'),  # optional
     ('SQLAlchemy', '2.0.29'),
 ]
 
@@ -29,15 +29,15 @@ use_pip = True
 sanity_pip_check = True
 
 exts_list = [
-    ('cmaes', '0.11.1', {
-        'checksums': ['cf71fa3679814723be771f2c9edd85f465b1bc1e409e1ad6d8a9e481efcd5160'],
+    ('cmaes', '0.10.0', {
+        'checksums': ['48afc70df027114739872b50489ae6b32461c307b92d084a63c7090a9742faf9'],
     }),
-    ('colorlog', '6.8.2', {
-        'checksums': ['3e3e079a41feb5a1b64f978b5ea4f46040a94f11f0e8bbb8261e3dbbeca64d44'],
+    ('colorlog', '6.8.0', {
+        'checksums': ['fbb6fdf9d5685f2517f388fb29bb27d54e8654dd31f58bc2a3b217e967a95ca6'],
     }),
     ('optuna', version, {
         'use_pip_extras': 'optional',
-        'checksums': ['146e530b57b4b9afd7526b3e642fbe65491f7e292b405913355f8e438e361ecf'],
+        'checksums': ['ca9e1ce16aa6c6a5af0e1cc1d0cbcd98eb1c75b6a2f06be6bd9c0c5ab0698724'],
     }),
 ]

Updated software `PyTorch-Lightning-1.8.4-foss-2022b.eb`

Diff against PyTorch-Lightning-2.2.1-foss-2023a-CUDA-12.1.1.eb

easybuild/easyconfigs/p/PyTorch-Lightning/PyTorch-Lightning-2.2.1-foss-2023a-CUDA-12.1.1.eb

diff --git a/easybuild/easyconfigs/p/PyTorch-Lightning/PyTorch-Lightning-2.2.1-foss-2023a-CUDA-12.1.1.eb b/easybuild/easyconfigs/p/PyTorch-Lightning/PyTorch-Lightning-1.8.4-foss-2022b.eb
index 9e4d061f65..acec48e218 100644
--- a/easybuild/easyconfigs/p/PyTorch-Lightning/PyTorch-Lightning-2.2.1-foss-2023a-CUDA-12.1.1.eb
+++ b/easybuild/easyconfigs/p/PyTorch-Lightning/PyTorch-Lightning-1.8.4-foss-2022b.eb
@@ -1,32 +1,23 @@
 easyblock = 'PythonBundle'
 
 name = 'PyTorch-Lightning'
-version = '2.2.1'
-versionsuffix = '-CUDA-%(cudaver)s'
+version = '1.8.4'
 
 homepage = 'https://pytorchlightning.ai'
 description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers."
 
-toolchain = {'name': 'foss', 'version': '2023a'}
-
-builddependencies = [
-    ('flit', '3.9.0'),
-    ('poetry', '1.5.1'),
-]
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 dependencies = [
-    ('CUDA', '12.1.1', '', SYSTEM),
-    ('Python', '3.11.3'),
+    ('Python', '3.10.8'),
     # dependencies from requirements/app/base.txt
     ('aiohttp', '3.8.5'),
-    ('BeautifulSoup', '4.12.2'),
+    ('BeautifulSoup', '4.11.1'),
     ('deepdiff', '6.7.1'),
     # dependencies from requirements/pytorch/base.txt
-    ('PyTorch', '2.1.2', versionsuffix),
-    ('tqdm', '4.66.1'),
+    ('PyTorch', '1.13.1'),
+    ('tqdm', '4.64.1'),
     ('tensorboardX', '2.6.2.2'),
-    ('pydantic', '2.5.3'),
-    ('typing-extensions', '4.9.0'),
 ]
 
 use_pip = True
@@ -36,137 +27,95 @@ exts_list = [
     ('commonmark', '0.9.1', {
         'checksums': ['452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60'],
     }),
-    ('mdurl', '0.1.2', {
-        'checksums': ['bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba'],
-    }),
-    ('markdown-it-py', '3.0.0', {
-        'modulename': 'markdown_it',
-        'checksums': ['e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb'],
+    ('rich', '12.5.1', {
+        'checksums': ['63a5c5ce3673d3d5fbbf23cd87e11ab84b6b451436f1b7f19ec54b6bc36ed7ca'],
     }),
-    ('rich', '13.7.1', {
-        'checksums': ['9be308cb1fe2f1f57d67ce99e95af38a1e2bc71ad9813b0e247cf7ffbcc3a432'],
+    ('pydantic', '1.10.2', {
+        'checksums': ['91b8e218852ef6007c2b98cd861601c6a09f1aa32bbbb74fab5b1c33d4a1e410'],
     }),
-    ('PyJWT', '2.8.0', {
+    ('PyJWT', '2.6.0', {
         'modulename': 'jwt',
-        'checksums': ['57e28d156e3d5c10088e0c68abb90bfac3df82b40a71bd0daa20c65ccd5c23de'],
+        'checksums': ['69285c7e31fc44f68a1feb309e948e0df53259d579295e6cfe2b1792329f05fd'],
     }),
-    ('starlette', '0.36.3', {
-        'checksums': ['90a671733cfb35771d8cc605e0b679d23b992f8dcfad48cc60b38cb29aeb7080'],
+    ('starlette', '0.19.1', {
+        'checksums': ['c6d21096774ecb9639acad41b86b7706e52ba3bf1dc13ea4ed9ad593d47e24c7'],
     }),
-    ('fastapi', '0.110.0', {
-        'checksums': ['266775f0dcc95af9d3ef39bad55cff525329a931d5fd51930aadd4f428bf7ff3'],
+    ('fastapi', '0.79.1', {
+        'checksums': ['006862dec0f0f5683ac21fb0864af2ff12a931e7ba18920f28cc8eceed51896b'],
     }),
-    ('sniffio', '1.3.1', {
-        'checksums': ['f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc'],
+    ('sniffio', '1.3.0', {
+        'checksums': ['e60305c5e5d314f5389259b7f22aaa33d8f7dee49763119234af3755c55b9101'],
     }),
-    ('exceptiongroup', '1.2.0', {
-        'checksums': ['91f5c769735f051a4290d52edd0858999b57e5876e9f85937691bd4c9fa3ed68'],
+    ('anyio', '3.6.1', {
+        'checksums': ['413adf95f93886e442aea925f3ee43baa5a765a64a0f52c6081894f9992fdd0b'],
     }),
-    ('anyio', '4.3.0', {
-        'checksums': ['f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6'],
-    }),
-    ('websocket-client', '1.7.0', {
+    ('websocket-client', '1.4.2', {
         'modulename': 'websocket',
-        'checksums': ['10e511ea3a8c744631d3bd77e61eb17ed09304c413ad42cf6ddfa4c7787e8fe6'],
-    }),
-    ('python_multipart', '0.0.9', {
-        'modulename': 'multipart',
-        'checksums': ['03f54688c663f1b7977105f021043b0793151e4cb1c1a9d4a11fc13d622c4026'],
+        'checksums': ['d6e8f90ca8e2dd4e8027c4561adeb9456b54044312dba655e7cae652ceb9ae59'],
     }),
-    ('h11', '0.14.0', {
-        'checksums': ['8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d'],
-    }),
-    ('uvicorn', '0.27.1', {
-        'checksums': ['3d9a267296243532db80c83a959a3400502165ade2c1338dea4e67915fd4745a'],
-    }),
-    ('lightning_cloud', '0.5.64', {
-        'checksums': ['44c44b387260e7f808bef7a2368966da166bf58fa37562a8ce8366febe3ca38e'],
+    ('lightning_cloud', '0.5.12', {
+        'checksums': ['5b0cf53ecfb512f9476eec3a7f425c0e174ca9d0e726673605d5e1e57074eb0c'],
     }),
     ('itsdangerous', '2.1.2', {
         'checksums': ['5dbbc68b317e5e42f327f9021763545dc3fc3bfe22e6deb96aaf1fc38874156a'],
     }),
-    ('starsessions', '2.1.3', {
-        'checksums': ['d20c5f277b64a86c16819f65ac50814ccdbd146776159e08c88b378b6612297d'],
+    ('starsessions', '1.3.0', {
+        'checksums': ['8d3b509d4e6d235655f7dd495fcf0afc1bd86da84de3a8d434e6f82137ebcde8'],
     }),
-    ('fsspec', '2024.2.0', {
-        'checksums': ['b6ad1a679f760dda52b1168c859d01b7b80648ea6f7f7c7f5a8a91dc3f3ecb84'],
+    ('fsspec', '2022.7.1', {
+        'checksums': ['7f9fb19d811b027b97c4636c6073eb53bc4cbee2d3c4b33fa88b9f26906fd7d7'],
     }),
-    ('croniter', '2.0.2', {
-        'checksums': ['8bff16c9af4ef1fb6f05416973b8f7cb54997c02f2f8365251f9bf1dded91866'],
+    ('croniter', '1.3.8', {
+        'checksums': ['32a5ec04e97ec0837bcdf013767abd2e71cceeefd3c2e14c804098ce51ad6cd9'],
     }),
-    ('traitlets', '5.14.1', {
-        'checksums': ['8585105b371a04b8316a43d5ce29c098575c2e477850b62b848b964f1444527e'],
+    ('traitlets', '5.2.0', {
+        'checksums': ['60474f39bf1d39a11e0233090b99af3acee93bbc2281777e61dd8c87da8a0014'],
     }),
-    ('types-python-dateutil', '2.8.19.20240106', {
-        'modulename': False,
-        'checksums': ['1f8db221c3b98e6ca02ea83a58371b22c374f42ae5bbdf186db9c9a76581459f'],
+    ('arrow', '1.2.3', {
+        'checksums': ['3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1'],
     }),
-    ('arrow', '1.3.0', {
-        'preinstallopts': "PYTHONPATH=$PWD:$PYTHONPATH ",
-        'checksums': ['d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85'],
+    ('lightning-utilities', '0.4.2', {
+        'checksums': ['dc6696ab180117f7e97b5488dac1d77765ab891022f7521a97a39e10d362bdb8'],
     }),
-    ('lightning-utilities', '0.10.1', {
-        'checksums': ['362755023dcf93b8fa519bc002ae41794943a3ffbc5318e40804d36aa14bf1fd'],
-    }),
-    ('blessed', '1.20.0', {
-        'checksums': ['2cdd67f8746e048f00df47a2880f4d6acbcdb399031b604e34ba8f71d5787680'],
+    ('blessed', '1.19.1', {
+        'checksums': ['9a0d099695bf621d4680dd6c73f6ad547f6a3442fbdbe80c4b1daa1edbc492fc'],
     }),
     ('python-editor', '1.0.4', {
         'modulename': 'editor',
         'checksums': ['51fda6bcc5ddbbb7063b2af7509e43bd84bfc32a4ff71349ec7847713882327b'],
     }),
-    ('readchar', '4.0.5', {
-        'checksums': ['08a456c2d7c1888cde3f4688b542621b676eb38cd6cfed7eb6cb2e2905ddc826'],
-    }),
-    ('runs', '1.2.2', {
-        'checksums': ['9dc1815e2895cfb3a48317b173b9f1eac9ba5549b36a847b5cc60c3bf82ecef1'],
+    ('readchar', '4.0.3', {
+        'checksums': ['1d920d0e9ab76ec5d42192a68d15af2562663b5dfbf4a67cf9eba520e1ca57e6'],
     }),
-    ('xmod', '1.8.1', {
-        'checksums': ['38c76486b9d672c546d57d8035df0beb7f4a9b088bc3fb2de5431ae821444377'],
+    ('inquirer', '2.10.1', {
+        'checksums': ['e9876258183e24f6e8c44136b04f6f2e18dd6684aee59b86a8057c50601a6523'],
     }),
-    ('editor', '1.6.6', {
-        'checksums': ['bb6989e872638cd119db9a4fce284cd8e13c553886a1c044c6b8d8a160c871f8'],
-    }),
-    ('inquirer', '3.2.4', {
-        'checksums': ['33b09efc1b742b9d687b540296a8b6a3f773399673321fcc2ab0eb4c109bf9b5'],
-    }),
-    ('wrapt', '1.16.0', {
-        'checksums': ['5f370f952971e7d17c7d1ead40e49f32345a7f7a5373571ef44d800d06b1899d'],
-    }),
-    ('aioitertools', '0.11.0', {
-        'checksums': ['42c68b8dd3a69c2bf7f2233bf7df4bb58b557bca5252ac02ed5187bbc67d6831'],
-    }),
-    ('botocore', '1.34.51', {
-        'checksums': ['5086217442e67dd9de36ec7e87a0c663f76b7790d5fb6a12de565af95e87e319'],
+    ('wrapt', '1.14.1', {
+        'checksums': ['380a85cf89e0e69b7cfbe2ea9f765f004ff419f34194018a6827ac0e3edfed4d'],
     }),
     ('jmespath', '1.0.1', {
         'checksums': ['90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe'],
     }),
-    ('s3transfer', '0.10.0', {
-        'checksums': ['d0c8bbf672d5eebbe4e57945e23b972d963f07d82f661cabf678a5c88831595b'],
+    ('botocore', '1.24.21', {
+        'checksums': ['7e976cfd0a61601e74624ef8f5246b40a01f2cce73a011ef29cf80a6e371d0fa'],
     }),
-    ('boto3', '1.34.51', {
-        'checksums': ['2cd9463e738a184cbce8a6824027c22163c5f73e277a35ff5aa0fb0e845b4301'],
+    ('aioitertools', '0.11.0', {
+        'checksums': ['42c68b8dd3a69c2bf7f2233bf7df4bb58b557bca5252ac02ed5187bbc67d6831'],
     }),
-    ('aiobotocore', '2.12.1', {
-        'checksums': ['8706b28f16f93c541f6ed50352115a79d8f3499539f8d0bb70aa0f7a5379c1fe'],
+    ('aiobotocore', '2.3.4', {
+        'checksums': ['6554ebea5764f66f4be544a4fcaa0953ee80e600dd7bd818ba4893d72bf12bfb'],
     }),
-    ('s3fs', '2024.2.0', {
-        'checksums': ['f8064f522ad088b56b043047c825734847c0269df19f2613c956d4c20de15b62'],
+    ('s3fs', '2022.7.1', {
+        'checksums': ['4883d682cb96b769fca568dbbcaa33ff457ac8077a03af221e6f253adac05771'],
     }),
-    ('torchmetrics', '1.3.1', {
-        'checksums': ['8d371f7597a1a5eb02d5f2ed59642d6fef09093926997ce91e18b1147cc8defa'],
+    ('torchmetrics', '0.9.3', {
+        'checksums': ['4ebfd2466021db26397636966ee1a195d3b340ba5d71bb258e764340dfc2476f'],
     }),
     ('pytorch-lightning', version, {
-        'checksums': ['aa3be30c9109239a371748565a7f4b7b41ea1395725c30e04426cf946b3e2745'],
+        'checksums': ['c2771f966fc1b909cdfd1d603a87b8c84a3d5ff7aacf35b2c0260f697ec0c8be'],
     }),
 ]
 
-sanity_check_paths = {
-    'files': [],
-    'dirs': ['bin', 'lib/python%(pyshortver)s/site-packages/dateutil-stubs'],
-}
-
 sanity_pip_check = True
 
 moduleclass = 'lib'

Updated software `pycodestyle-2.11.1-foss-2022b.eb`

Diff against pycodestyle-2.11.1-foss-2023a.eb

easybuild/easyconfigs/p/pycodestyle/pycodestyle-2.11.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/p/pycodestyle/pycodestyle-2.11.1-foss-2023a.eb b/easybuild/easyconfigs/p/pycodestyle/pycodestyle-2.11.1-foss-2022b.eb
index 66965820b1..562cc2adea 100644
--- a/easybuild/easyconfigs/p/pycodestyle/pycodestyle-2.11.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/p/pycodestyle/pycodestyle-2.11.1-foss-2022b.eb
@@ -6,13 +6,13 @@ version = '2.11.1'
 homepage = "https://pycodestyle.readthedocs.io"
 description = """pycodestyle is a tool to check your Python code against some of the style conventions in PEP 8."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 sources = [SOURCE_TAR_GZ]
 checksums = ['41ba0e7afc9752dfb53ced5489e89f8186be00e599e712660695b7a75ff2663f']
 
 dependencies = [
-    ('Python', '3.11.3'),
+    ('Python', '3.10.8'),
 ]
 
 download_dep_fail = True

Updated software `Redis-7.2.3-GCCcore-12.2.0.eb`

Diff against Redis-7.4.1-GCCcore-13.3.0.eb

easybuild/easyconfigs/r/Redis/Redis-7.4.1-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/r/Redis/Redis-7.4.1-GCCcore-13.3.0.eb b/easybuild/easyconfigs/r/Redis/Redis-7.2.3-GCCcore-12.2.0.eb
index 299d66ea0b..823ff30517 100644
--- a/easybuild/easyconfigs/r/Redis/Redis-7.4.1-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/r/Redis/Redis-7.2.3-GCCcore-12.2.0.eb
@@ -1,7 +1,7 @@
 easyblock = 'ConfigureMake'
 
 name = 'Redis'
-version = '7.4.1'
+version = '7.2.3'
 
 homepage = 'https://redis.io'
 description = """Redis is an open source (BSD licensed), in-memory data structure store, used as
@@ -12,22 +12,19 @@ Lua scripting, LRU eviction, transactions, and different levels of on-disk
 persistence, and provides high availability via Redis Sentinel and automatic
 partitioning with Redis Cluster."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
 
 source_urls = ['https://download.redis.io/releases']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['bc34b878eb89421bbfca6fa78752343bf37af312a09eb0fae47c9575977dfaa2']
+checksums = ['3e2b196d6eb4ddb9e743088bfc2915ccbb42d40f5a8a3edd8cb69c716ec34be7']
 
 builddependencies = [
-    ('binutils', '2.42'),
-    ('pkgconf', '2.2.0'),
+    ('pkgconf', '1.9.3'),
+    ('binutils', '2.39'),
 ]
 
 skipsteps = ['configure']
 
-# tests must be run from a local filesystem
-# runtest = 'test'
-
 installopts = 'PREFIX="%(installdir)s"'
 
 sanity_check_paths = {

Updated software `redis-py-5.0.1-GCCcore-12.2.0.eb`

Diff against redis-py-5.1.1-GCCcore-13.3.0.eb

easybuild/easyconfigs/r/redis-py/redis-py-5.1.1-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/r/redis-py/redis-py-5.1.1-GCCcore-13.3.0.eb b/easybuild/easyconfigs/r/redis-py/redis-py-5.0.1-GCCcore-12.2.0.eb
index 257c413dba..3c71c6c719 100644
--- a/easybuild/easyconfigs/r/redis-py/redis-py-5.1.1-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/r/redis-py/redis-py-5.0.1-GCCcore-12.2.0.eb
@@ -1,24 +1,22 @@
 easyblock = 'PythonBundle'
 
 name = 'redis-py'
-version = '5.1.1'
+version = '5.0.1'
 
 homepage = 'https://github.com/redis/redis-py'
 description = "The Python interface to the Redis key-value store."
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
-
-builddependencies = [
-    ('binutils', '2.42'),
-]
+toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
 
+builddependencies = [('binutils', '2.39')]
 dependencies = [
-    ('Python', '3.12.3'),
-    ('typing-extensions', '4.11.0'),
-    ('Redis', '7.4.1'),
+    ('Python', '3.10.8'),
+    ('typing-extensions', '4.9.0'),
+    ('Redis', '7.2.3'),
 ]
 
 use_pip = True
+sanity_pip_check = True
 
 exts_list = [
     ('async-timeout', '4.0.3', {
@@ -27,11 +25,9 @@ exts_list = [
     (name, version, {
         'modulename': 'redis',
         'source_urls': ['https://github.com/redis/redis-py/archive/refs/tags/'],
-        'sources': ['v%(version)s.tar.gz'],
-        'checksums': ['e1df6dd98eb2bdbc68dabb4b19a5167468ae36dbb53a1c777d5cf7ba8345450e'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
+        'checksums': ['0a40afc824a5a3b465db4ba868a056a83779482f22d7d003c48fca230d9fe93a'],
     }),
 ]
 
-sanity_pip_check = True
-
 moduleclass = "data"

Updated software `SHAP-0.43.0-foss-2022b.eb`

Diff against SHAP-0.43.0-foss-2023a.eb

easybuild/easyconfigs/s/SHAP/SHAP-0.43.0-foss-2023a.eb

diff --git a/easybuild/easyconfigs/s/SHAP/SHAP-0.43.0-foss-2023a.eb b/easybuild/easyconfigs/s/SHAP/SHAP-0.43.0-foss-2022b.eb
index 6be374eb21..cca163e6ee 100644
--- a/easybuild/easyconfigs/s/SHAP/SHAP-0.43.0-foss-2023a.eb
+++ b/easybuild/easyconfigs/s/SHAP/SHAP-0.43.0-foss-2022b.eb
@@ -8,13 +8,13 @@ description = """SHAP (SHapley Additive exPlanations) is a game theoretic approa
  machine learning model. It connects optimal credit allocation with local explanations using the classic Shapley
  values from game theory and their related extensions."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('scikit-learn', '1.3.1'),
-    ('tqdm', '4.66.1'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
+    ('scikit-learn', '1.2.1'),
+    ('tqdm', '4.64.1'),
     ('numba', '0.58.1'),
 ]

Updated software `spaCy-3.7.4-foss-2022b.eb`

Diff against spaCy-3.7.4-foss-2023a.eb

easybuild/easyconfigs/s/spaCy/spaCy-3.7.4-foss-2023a.eb

diff --git a/easybuild/easyconfigs/s/spaCy/spaCy-3.7.4-foss-2023a.eb b/easybuild/easyconfigs/s/spaCy/spaCy-3.7.4-foss-2022b.eb
index e8c79ceb6b..825f9f573c 100644
--- a/easybuild/easyconfigs/s/spaCy/spaCy-3.7.4-foss-2023a.eb
+++ b/easybuild/easyconfigs/s/spaCy/spaCy-3.7.4-foss-2022b.eb
@@ -6,17 +6,12 @@ version = '3.7.4'
 homepage = 'https://spacy.io/'
 description = "Industrial-strength Natural Language Processing (NLP) in Python."
 
-toolchain = {'name': 'foss', 'version': '2023a'}
-
-builddependencies = [
-    ('poetry', '1.7.1'),
-    ('hatchling', '1.18.0'),
-]
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('tqdm', '4.66.1'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
+    ('tqdm', '4.64.1'),
     ('pydantic', '2.5.3'),
 ]

Updated software `synthcity-0.2.10-foss-2022b.eb`

Diff against synthcity-0.2.4-foss-2022a.eb

easybuild/easyconfigs/s/synthcity/synthcity-0.2.4-foss-2022a.eb

diff --git a/easybuild/easyconfigs/s/synthcity/synthcity-0.2.4-foss-2022a.eb b/easybuild/easyconfigs/s/synthcity/synthcity-0.2.10-foss-2022b.eb
index 2d2a1ab0f5..cd64d6ed49 100644
--- a/easybuild/easyconfigs/s/synthcity/synthcity-0.2.4-foss-2022a.eb
+++ b/easybuild/easyconfigs/s/synthcity/synthcity-0.2.10-foss-2022b.eb
@@ -1,167 +1,242 @@
 easyblock = 'PythonBundle'
 
 name = 'synthcity'
-version = '0.2.4'
+version = '0.2.10'
 
-local_pytorch_version = '1.12.0'
+local_pytorch_version = '1.13.1'
 
 homepage = 'https://github.com/vanderschaarlab/synthcity'
 description = """A library for generating and evaluating synthetic tabular data."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
+builddependencies = [('hypothesis', '6.68.2')]  # for numpy 1.23.5
 dependencies = [
-    ('Python', '3.10.4'),
-    ('lifelines', '0.27.4'),
-    ('SciPy-bundle', '2022.05'),
-    ('pydantic', '1.10.4'),
-    ('Redis', '7.0.8'),
-    ('scikit-learn', '1.1.2'),
-    ('SHAP', '0.41.0'),
+    ('Python', '3.10.8'),
+    ('lifelines', '0.27.7'),
+    ('SciPy-bundle', '2023.02'),
+    ('pydantic', '2.5.3'),
+    ('Redis', '7.2.3'),
+    ('scikit-learn', '1.2.1'),
+    ('SHAP', '0.43.0'),
     ('PyTorch', local_pytorch_version),
     ('XGBoost', '1.7.2'),
-    ('tqdm', '4.64.0'),
-    ('Mako', '1.2.0'),
-    ('PyYAML', '6.0'),
-    ('fastai', '2.7.10'),
-    ('h5py', '3.7.0'),
-    ('networkx', '2.8.4'),
-    ('protobuf', '3.19.4'),
-    ('Arrow', '8.0.0'),
-    ('pybind11', '2.9.2'),
-    ('PyTorch-Lightning', '1.8.4'),
-    ('spaCy', '3.4.4'),
-    ('tensorboard', '2.10.0'),
-    ('torchvision', '0.13.1'),
+    ('tqdm', '4.64.1'),
+    ('HF-Datasets', '2.14.4'),
+    ('Transformers', '4.30.2'),
+    ('fastai', '2.7.15'),
+    ('h5py', '3.8.0'),
     ('Brotli-python', '1.0.9'),
-    ('statsmodels', '0.13.1'),
-    ('imbalanced-learn', '0.10.1'),
-    ('Greenlet', '2.0.2'),
-    ('Optuna', '3.1.0'),
-    ('Cython', '0.29.33'),
-    ('cython-blis', '0.9.1'),
-    ('torchtext', '0.14.1', '-PyTorch-%s' % local_pytorch_version),
-    ('IPython', '8.5.0'),
-    ('MONAI', '1.0.1'),
+    ('statsmodels', '0.14.0'),
+    ('imbalanced-learn', '0.12.3'),
+    ('Optuna', '3.5.0'),
+    ('MONAI', '1.3.0'),
+    ('DECAF-synthetic-data', '0.1.6'),
+    ('PyTorch-Lightning', '1.8.4'),
+    # TESTS
+    ('JupyterNotebook', '7.0.3'),
+    ('python-igraph', '0.10.6'),
+    ('coverage', '7.2.3'),
+    ('py-cpuinfo', '9.0.0'),
+    ('pycodestyle', '2.11.1'),
 ]
 
-sanity_pip_check = True
-use_pip = True
+# unpin pydantic version restriction
+local_preinstallopts = "sed -i 's/pydantic<2.0/pydantic/' %(builddir)s/%(name)s/%(name)s-%(version)s/setup.cfg && "
+
+# ignore the failing part of ddpm test - seems constraints are wrong
+# see https://github.com/vanderschaarlab/synthcity/blob/v0.2.10/tests/plugins/generic/test_ddpm.py#L114
+local_pretestopts = (
+    "sed -i '138,144d' %(builddir)s/%(name)s/%(name)s-%(version)s/tests/plugins/generic/test_ddpm.py && "
+)
+# solve problem with PyTorch-Lightning _validate_srun_variables method
+# see https://github.com/easybuilders/easybuild-easyconfigs/pull/21141#issuecomment-2318854045
+local_pretestopts += "export SLURM_NTASKS_PER_NODE=$SLURM_NTASKS && "
+
+# fix invalid syntax of xgbse/setup.py
+local_xgbse_preinstallopts = r"sed -i -e '45,49d' -e 's/pandas>=1.0.\*/pandas>=1.0.0/' setup.py && "
 
 exts_list = [
-    ('decaf_synthetic_data', '0.1.6', {
-        'modulename': 'decaf',
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['dc51502f9f72b3fbdbef697238d72ae6b8457f76efc9763a747970ba543d4e0f'],
+    ('cfgv', '3.4.0', {
+        'checksums': ['e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560'],
     }),
-    ('feather-format', '0.4.1', {
-        'modulename': 'feather',
-        'checksums': ['45f67e3745d394d4f160ca6d636bbfd4f8b68d01199dc1649b6e487d3e878903'],
+    ('pyflakes', '3.2.0', {
+        'checksums': ['1c61603ff154621fb2a9172037d84dca3500def8c8b630657d1701f026f8af3f'],
     }),
-    ('fflows', '0.0.3', {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['18de7a7b98e3708ff2d5ae9f10fad625740230c4de6447906b7ca477667b78fb'],
+    ('mccabe', '0.7.0', {
+        'checksums': ['348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325'],
     }),
-    ('fsspec', '2022.7.1', {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['36c5a8e7c4fc20cf32ef6934ac0a122accc8a593ddc8478d30c3ca4dbbd95500'],
+    ('restructuredtext_lint', '1.4.0', {
+        'checksums': ['1b235c0c922341ab6c530390892eb9e92f90b9b75046063e047cacfb0f050c45'],
     }),
-    ('functorch', '0.2.0', {
-        'source_urls': ['https://github.com/pytorch/%(name)s/archive/'],
-        'sources': ['v%(version)s.tar.gz'],
-        'checksums': ['ea6446b60d5e0847140e1a0dcb91d8a7de2b5844bba7c3f7560eb5020a05881f'],
+    ('stevedore', '5.2.0', {
+        'checksums': ['46b93ca40e1114cea93d738a6c1e365396981bb6bb78c27045b7587c9473544d'],
     }),
-    ('geomloss', '0.2.5', {
-        'checksums': ['dcd851cc3c9625f384d4c18d235a790821162c34a2be503a61966b355b98456e'],
+    ('nodeenv', '1.9.1', {
+        'checksums': ['6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f'],
     }),
-    ('inflate64', '0.3.1', {
-        'checksums': ['b52dd8fefd2ba179e5dfa18d6eca7e2fc822584616271c039d5ef1f9ca90c71c'],
+    ('identify', '2.6.0', {
+        'checksums': ['cb171c685bdc31bcc4c1734698736a7d5b6c8bf2e0c15117f4d469c8640ae5cf'],
     }),
-    ('keopscore', '2.1.1', {
-        'checksums': ['07b4d254a28a9d4a43153663856677263dd7112912efacbad83c2a76ea0836f0'],
+    ('mypy_extensions', '1.0.0', {
+        'checksums': ['75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782'],
     }),
-    ('loguru', '0.6.0', {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['4e2414d534a2ab57573365b3e6d0234dfb1d84b68b7f3b948e6fb743860a77c3'],
+    ('pytest-cov', '5.0.0', {
+        'checksums': ['5837b58e9f6ebd335b0f8060eecce69b662415b16dc503883a02f45dfeb14857'],
     }),
-    ('multivolumefile', '0.2.3', {
+    ('bandit', '1.7.9', {
+        'checksums': ['7c395a436743018f7be0a4cbb0a4ea9b902b6d87264ddecf8cfdc73b4f78ff61'],
+    }),
+    ('black', '22.12.0', {
+        'checksums': ['229351e5a18ca30f447bf724d007f890f97e13af070bb6ad4c0a441cd7596a2f'],
+    }),
+    ('black-nb', '0.7', {
+        'checksums': ['8742a4f7c728302c91954325168d779f9444f8e3c31b19598ee8e98fc4bf4782'],
+    }),
+    ('darglint', '1.8.1', {
+        'checksums': ['080d5106df149b199822e7ee7deb9c012b49891538f14a11be681044f0bb20da'],
+    }),
+    ('doc8', '1.1.1', {
+        'checksums': ['d97a93e8f5a2efc4713a0804657dedad83745cca4cd1d88de9186f77f9776004'],
+    }),
+    ('flake8', '7.0.0', {
+        'checksums': ['33f96621059e65eec474169085dc92bf26e7b2d47366b70be2f67ab80dc25132'],
+    }),
+    ('isort', '5.13.2', {
+        'checksums': ['48fdfcb9face5d58a4f6dde2e72a1fb8dcaf8ab26f95ab49fab84c2ddefb0109'],
+    }),
+    ('pytest-benchmark', '4.0.0', {
+        'checksums': ['fb0785b83efe599a6a956361c0691ae1dbb5318018561af10f3e915caa0048d1'],
+    }),
+    ('pytest-xprocess', '1.0.2', {
+        'modulename': 'xprocess',
+        'checksums': ['15e270637586eabc56755ee5fcc81c48bdb46ba7ef7c0d5b1b64302d080cc60f'],
+    }),
+    ('pre_commit', '3.7.1', {
+        'checksums': ['8ca3ad567bc78a4972a3f1a477e94a79d4597e8140a6e0b651c5e33899c3654a'],
+    }),
+    ('typing_extensions', '4.9.0', {
+        'checksums': ['23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783'],
+    }),
+    ('fflows', '0.0.3', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['237f4353b60af1703087cf7725755a1f6fcaeeea48421e1896940cd1c920d678'],
+        'checksums': ['18de7a7b98e3708ff2d5ae9f10fad625740230c4de6447906b7ca477667b78fb'],
+    }),
+    ('geomloss', '0.2.6', {
+        'checksums': ['491c47085c5001b2cb6128ea541fd2d0a8808ae50e88a0798c7853c9d995faeb'],
     }),
     ('nflows', '0.14', {
         'checksums': ['6299844a62f9999fcdf2d95cb2d01c091a50136bd17826e303aba646b2d11b55'],
     }),
-    ('opacus', '1.3.0', {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['ef5d6f2aab56901d714ee56fd177a3627d14d820b2ec49cb8bc8a6f52c326507'],
-    }),
     ('opt_einsum', '3.3.0', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
         'checksums': ['2455e59e3947d3c275477df7f5205b30635e266fe6dc300e3d9f9646bfcea147'],
     }),
-    ('pgmpy', '0.1.21', {
+    ('opacus', '1.4.0', {
+        'checksums': ['7a41d49c34af8e4308189bc8c2b22e65cf1edc0373477a02a43ccd957bac970d'],
+    }),
+    ('pgmpy', '0.1.25', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['3c442320e7822892813b4eb56e048729d3bde053a707b5bb032685af6b372246'],
+        'checksums': ['7c4fb15e4c0fd0310160a6a77297d6db382bd18f6ff35fcd0458c3cbd42caf78'],
     }),
-    ('py7zr', '0.20.4', {
-        'checksums': ['1d01f98ea1e1f5c49940358691b2076f9a5848056426541e783de33834f59e21'],
+    ('feather-format', '0.4.1', {
+        'modulename': 'feather',
+        'checksums': ['45f67e3745d394d4f160ca6d636bbfd4f8b68d01199dc1649b6e487d3e878903'],
     }),
-    ('pybcj', '1.0.1', {
-        'modulename': 'bcj',
-        'checksums': ['8b682ed08caabfb7c042d4be083e28ddc692afb1deff5567111f8855071b75c3'],
+    ('inflate64', '1.0.0', {
+        'checksums': ['3278827b803cf006a1df251f3e13374c7d26db779e5a33329cc11789b804bc2d'],
     }),
-    ('pycox', '0.2.3', {
+    ('multivolumefile', '0.2.3', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['9ea3c64a4a650ccf6c96cf512712de330f2d75de32122d86995c7cd37ff105d1'],
+        'checksums': ['237f4353b60af1703087cf7725755a1f6fcaeeea48421e1896940cd1c920d678'],
     }),
-    ('pycryptodomex', '3.17', {
-        'modulename': 'Crypto',
-        'checksums': ['0af93aad8d62e810247beedef0261c148790c52f3cd33643791cc6396dd217c1'],
+    ('pybcj', '1.0.2', {
+        'modulename': 'bcj',
+        'checksums': ['c7f5bef7f47723c53420e377bc64d2553843bee8bcac5f0ad076ab1524780018'],
     }),
-    ('pykeops', '2.1.1', {
-        'checksums': ['1931823c746345ce5a5805adad6baa1add772c6fe1800375f7f9a3ddb38b6f71'],
+    ('pycryptodomex', '3.20.0', {
+        'modulename': 'Crypto',
+        'checksums': ['7a710b79baddd65b806402e14766c721aee8fb83381769c27920f26476276c1e'],
     }),
     ('pyppmd', '1.0.0', {
         'checksums': ['075c9bd297e3b0a87dd7aeabca7fee668218acbe69ecc1c6511064558de8840f'],
     }),
-    ('pyts', '0.12.0', {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['acd66b0cf1fd17d9ce6449335f5da30701f65fdee185d4b918726b62ca6af79d'],
-    }),
-    ('pyzstd', '0.15.4', {
-        'checksums': ['de07ac54f57642f186732075cdce2be3d4a30228c3b17a6d8c6053765dc6eec8'],
+    ('pyzstd', '0.16.0', {
+        'checksums': ['fd43a0ae38ae15223fb1057729001829c3336e90f4acf04cf12ebdec33346658'],
     }),
-    ('texttable', '1.6.7', {
-        'source_tmpl': '%(name)s-%(version)s-py2.py3-none-any.whl',
-        'checksums': ['b7b68139aa8a6339d2c320ca8b1dc42d13a7831a346b446cb9eb385f0c76310c'],
+    ('texttable', '1.7.0', {
+        'checksums': ['2d2068fb55115807d3ac77a4ca68fa48803e84ebb0ee2340f858107a36522638'],
     }),
-    ('thinc', '8.1.9', {
-        'checksums': ['8a1e65529c6d0796271d2a7e5ca6ea013fcb7dad69ec609d5093a25808107f51'],
-        # we are using blis 0.9.1
-        # thinc has problems with blis>0.8.0 on Windows only (https://github.com/explosion/thinc/pull/772)
-        'preinstallopts': 'sed -i "s/blis>=0.7.8,<0.8.0/blis>=0.7.8/g" setup.cfg && ',
+    ('py7zr', '0.20.6', {
+        'checksums': ['d036dee11fce69ad8d4fa86025ccfc4a3511ec27ee1c6b5bd8d6759313dbd077'],
     }),
     ('torchtuples', '0.2.2', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
         'checksums': ['186625230a149cc09f64116d51b203ffefe78160f5a0445adad195893663f55b'],
     }),
-    ('tsai', '0.3.5', {
+    ('pycox', '0.2.3', {
         'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['f5b888f7b968d1826a74eab3b8fa9559c6985d8532c017a4d85809e6c8e6cadd'],
+        'checksums': ['9ea3c64a4a650ccf6c96cf512712de330f2d75de32122d86995c7cd37ff105d1'],
+    }),
+    ('keopscore', '2.2.3', {
+        'checksums': ['64d5dad1e8c806d7070cdc60e48fd5bbf006f2bf1afd39ad3fa5e9fb213517d2'],
+    }),
+    ('pykeops', '2.2.3', {
+        'checksums': ['2e2cba1de5e05c35559957a14f41cb5165dc667cc51b3b2118d7e0027eb435a1'],
+    }),
+    ('pyts', '0.13.0', {
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['b49608267b686ea693dba31316ef2b22ad73ea29b27144696c347809ecd5ad62'],
+    }),
+    ('tsai', '0.3.9', {
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['0e6460e9ff075176c8af25ef90444ef2e287bc5fe5510e2a0f427e4d0b37ebc0'],
+    }),
+    ('accelerate', '0.31.0', {
+        'checksums': ['b5199865b26106ccf9205acacbe8e4b3b428ad585e7c472d6a46f6fb75b6c176'],
+    }),
+    ('be_great', '0.0.7', {
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['824f10482581f5211d3a435d8b14adcc6c21b38d952f00b6a792fc7c089788b1'],
     }),
     ('xgbse', '0.2.3', {
+        'preinstallopts': local_xgbse_preinstallopts,
         'source_urls': ['https://github.com/loft-br/xgboost-survival-embeddings/archive/'],
-        'sources': ['v%(version)s.tar.gz'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
         'checksums': ['9e6b71539b2b533c00eddfe7681cdd541f393d9573594eca358d263b141c127d'],
     }),
+    ('arfpy', '0.1.1', {
+        'checksums': ['88170d5e72638b0dbfec28cfbdfee02e97bd6a06d5a636e960acd5d90d480707'],
+    }),
+    ('numpy', '1.23.5', {
+        'patches': [
+            {'name': 'numpy-1.20.3_fix-fortran-compiler-error.patch', 'alt_location': 'SciPy-bundle'},
+            {'name': 'numpy-1.22.3_disable-broken-override-test.patch', 'alt_location': 'SciPy-bundle'},
+        ],
+        'checksums': [
+            {'numpy-1.23.5.tar.gz': '1b1766d6f397c18153d40015ddfc79ddb715cabadc04d2d228d4e5a8bc4ded1a'},
+            {'numpy-1.20.3_fix-fortran-compiler-error.patch':
+             '016e0d02ffabe013248c4fd203a4456edee76839f747c05daf92ac1fe9925189'},
+            {'numpy-1.22.3_disable-broken-override-test.patch':
+             '9c589bb073b28b25ff45eb3c63c57966aa508dd8b318d0b885b6295271e4983c'},
+        ],
+    }),
     (name, version, {
-        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
-        'checksums': ['424448d420331743458bf63558a06a5fbefbad19392718cd0a755d4a4878476c'],
+        'preinstallopts': local_preinstallopts,
+        'source_urls': ['https://github.com/vanderschaarlab/synthcity/archive/'],
+        'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}],
+        'testinstall': True,
+        'runtest': local_pretestopts + 'cd tests && pytest -vvvs -m "not slow" --durations=50',
+        'checksums': ['122a8546cad35e3ac5c74cf81281252dec4dd3c7b1d7afe0f45ef785f89cc682'],
     }),
 ]
 
+sanity_pip_check = True
+use_pip = True
+
 sanity_check_commands = [
     "python -c 'from synthcity.plugins import Plugins'",
+    "python -c 'from decaf import DECAF, DataModule'",
 ]
 
 moduleclass = 'lib'

Updated software `torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb`

Diff against torchtext-0.14.1-foss-2022a-PyTorch-1.12.0.eb

easybuild/easyconfigs/t/torchtext/torchtext-0.14.1-foss-2022a-PyTorch-1.12.0.eb

diff --git a/easybuild/easyconfigs/t/torchtext/torchtext-0.14.1-foss-2022a-PyTorch-1.12.0.eb b/easybuild/easyconfigs/t/torchtext/torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb
index 4a64965243..7903b8102f 100644
--- a/easybuild/easyconfigs/t/torchtext/torchtext-0.14.1-foss-2022a-PyTorch-1.12.0.eb
+++ b/easybuild/easyconfigs/t/torchtext/torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb
@@ -2,37 +2,37 @@ easyblock = 'PythonPackage'
 
 name = 'torchtext'
 version = '0.14.1'
-local_pytorch_version = '1.12.0'
+local_pytorch_version = '1.13.1'
 versionsuffix = '-PyTorch-%s' % local_pytorch_version
 
 homepage = 'https://github.com/pytorch/text'
 description = "Data loaders and abstractions for text and NLP"
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 # Sources are no longer available in PyPI, it only has wheels
 source_urls = ['https://github.com/pytorch/text/archive/']
-sources = ['v%(version)s.tar.gz']
+sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}]
 patches = ['torchtext-0.14.1_deps_fix.patch']
 checksums = [
-    {'v0.14.1.tar.gz': 'fd1ef3da7d9c20408c740f7dc7d02ad52a6048b46368355a1a7326d3bc4f2e63'},
+    {'torchtext-0.14.1.tar.gz': 'fd1ef3da7d9c20408c740f7dc7d02ad52a6048b46368355a1a7326d3bc4f2e63'},
     {'torchtext-0.14.1_deps_fix.patch': '3830747bfb3624a94efa8c8132b1764277b38f3b80cc9f452fba2475465d7ec1'},
 ]
 
 builddependencies = [
-    ('RE2', '2022-06-01'),
-    ('binutils', '2.38'),
+    ('RE2', '2023-03-01'),
+    ('binutils', '2.39'),
     ('CMake', '3.24.3'),
 ]
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('SciPy-bundle', '2022.05'),
-    ('SentencePiece', '0.1.97'),
-    ('tqdm', '4.64.0'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
+    ('SentencePiece', '0.1.99'),
+    ('tqdm', '4.64.1'),
     ('PyTorch', local_pytorch_version),
-    ('double-conversion', '3.2.0'),
-    ('utf8proc', '2.7.0'),
+    ('double-conversion', '3.2.1'),
+    ('utf8proc', '2.8.0'),
 ]
 
 download_dep_fail = True,

Updated software `XGBoost-1.7.2-foss-2022b.eb`

Diff against XGBoost-2.1.1-gfbf-2023b.eb

easybuild/easyconfigs/x/XGBoost/XGBoost-2.1.1-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/x/XGBoost/XGBoost-2.1.1-gfbf-2023b.eb b/easybuild/easyconfigs/x/XGBoost/XGBoost-1.7.2-foss-2022b.eb
index 91e9be0529..937201a36b 100644
--- a/easybuild/easyconfigs/x/XGBoost/XGBoost-2.1.1-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/x/XGBoost/XGBoost-1.7.2-foss-2022b.eb
@@ -1,29 +1,29 @@
 easyblock = 'PythonPackage'
 
 name = 'XGBoost'
-version = '2.1.1'
+version = '1.7.2'
 
 homepage = 'https://github.com/dmlc/xgboost'
 description = """XGBoost is an optimized distributed gradient boosting library designed to be highly efficient,
  flexible and portable."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2022b'}
 
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['4b1729837f9f1ba88a32ef1be3f8efb860fee6454a68719b196dc88032c23d97']
+checksums = ['f1a749aedb9330afc48007cc78b8bbbbea35ce372f48a2735f9c71bbc7b8dcfb']
 
-builddependencies = [
-    ('CMake', '3.27.6'),
-    ('hatchling', '1.18.0'),
-]
+builddependencies = [('CMake', '3.24.3')]
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('SciPy-bundle', '2023.11'),
+    ('Python', '3.10.8'),
+    ('SciPy-bundle', '2023.02'),
 ]
 
 use_pip = True
 download_dep_fail = True
 sanity_pip_check = True
 
-moduleclass = 'ai'
+# use the parallel parameter from EB instead of total procs in the system
+preinstallopts = "sed -i 's/nproc = os.cpu_count.*$/nproc = %(parallel)s/' setup.py &&"
+
+moduleclass = 'lib'

boegel

lgtm

pavelToman mentioned this pull request Aug 7, 2024

Synthcity vscentrum/vsc-software-stack#357

Open

2 tasks

pavelToman and others added 4 commits August 7, 2024 13:09

Update synthcity-0.2.10-foss-2022b.eb try raw string

e1847a4

Update easyconfigs.py - PyTorch-Lightning exception for synthcity

51357fa

fix new line and comment indent

eaf2389

add HF-Datasets ec

5e0f098

add alt_location for numpy patches

2a64e21

boegel requested changes Aug 19, 2024

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easybuild/easyconfigs/s/synthcity/synthcity-0.2.10-foss-2022b.eb Outdated Show resolved Hide resolved

Update easybuild/easyconfigs/s/synthcity/synthcity-0.2.10-foss-2022b.…

324d07c

…eb - SciPy typo Co-authored-by: Kenneth Hoste <[email protected]>

update patches checksums

f2f5962

pavelToman added a commit to pavelToman/easybuild-easyconfigs that referenced this pull request Aug 20, 2024

Update python-igraph-0.10.6-foss-2022b.eb - add cairo dep

a8843e9

Seems on some systems (generoso) it picked system cairo - so it did not fail easybuilders#21141 (comment)

pavelToman mentioned this pull request Aug 20, 2024

Add missing cairo dependency for python-igraph v0.10.6 #21211

Merged

fix SLURM NTASK in test step

4164dcb

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

17c6e9a

…asyconfigs into 20240807125845_new_pr_synthcity0210

boegel previously approved these changes Nov 15, 2024

View reviewed changes

boegel added new update labels Nov 16, 2024

boegel added this to the 4.x milestone Nov 16, 2024

boegel dismissed their stale review via 37f0cbc November 16, 2024 09:54

boegel force-pushed the 20240807125845_new_pr_synthcity0210 branch from 37f0cbc to 17c6e9a Compare November 16, 2024 11:38

easybuilders deleted a comment from github-actions bot Nov 16, 2024

boegel approved these changes Nov 16, 2024

View reviewed changes

{lib}[foss/2022b] synthcity v0.2.10, DECAF-synthetic-data v0.1.6, PyTorch-Lightning v1.8.4, ... w/ PyTorch 1.13.1 #21141

Are you sure you want to change the base?

{lib}[foss/2022b] synthcity v0.2.10, DECAF-synthetic-data v0.1.6, PyTorch-Lightning v1.8.4, ... w/ PyTorch 1.13.1 #21141

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Updated software fastai-2.7.15-foss-2022b.eb

Updated software HF-Datasets-2.14.4-gfbf-2022b.eb

Updated software imbalanced-learn-0.12.3-gfbf-2022b.eb

Updated software lifelines-0.27.7-foss-2022b.eb

Updated software Optuna-3.5.0-foss-2022b.eb

Updated software PyTorch-Lightning-1.8.4-foss-2022b.eb

Updated software pycodestyle-2.11.1-foss-2022b.eb

Updated software Redis-7.2.3-GCCcore-12.2.0.eb

Updated software redis-py-5.0.1-GCCcore-12.2.0.eb

Updated software SHAP-0.43.0-foss-2022b.eb

Updated software spaCy-3.7.4-foss-2022b.eb

Updated software synthcity-0.2.10-foss-2022b.eb

Updated software torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb

Updated software XGBoost-1.7.2-foss-2022b.eb

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pavelToman commented Aug 7, 2024 •

edited

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Updated software `fastai-2.7.15-foss-2022b.eb`

Updated software `HF-Datasets-2.14.4-gfbf-2022b.eb`

Updated software `imbalanced-learn-0.12.3-gfbf-2022b.eb`

Updated software `lifelines-0.27.7-foss-2022b.eb`

Updated software `Optuna-3.5.0-foss-2022b.eb`

Updated software `PyTorch-Lightning-1.8.4-foss-2022b.eb`

Updated software `pycodestyle-2.11.1-foss-2022b.eb`

Updated software `Redis-7.2.3-GCCcore-12.2.0.eb`

Updated software `redis-py-5.0.1-GCCcore-12.2.0.eb`

Updated software `SHAP-0.43.0-foss-2022b.eb`

Updated software `spaCy-3.7.4-foss-2022b.eb`

Updated software `synthcity-0.2.10-foss-2022b.eb`

Updated software `torchtext-0.14.1-foss-2022b-PyTorch-1.13.1.eb`

Updated software `XGBoost-1.7.2-foss-2022b.eb`