Popular repositories Loading

1. excluderanges excluderanges Public

   Genomic coordinates of problematic genomic regions as GRanges

   R 28 3

2. TADCompare TADCompare Public

   Package for analysis and characterization of differential TADs

   R 22 2

3. HiCcompare HiCcompare Public

   Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

   R 19 3

4. multiHiCcompare multiHiCcompare Public

   Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

   R 8 8

5. SpectralTAD SpectralTAD Public

   TAD Calling using spectral clustering in R

   R 8 3

6. preciseTAD preciseTAD Public

   preciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution

   R 7