blood-classifier 🩸

Blood and Bone Marrow classifier

Used Data

Matek, C., Krappe, S., Münzenmayer, C., Haferlach, T., & Marr, C. (2021). An Expert-Annotated Dataset of Bone Marrow Cytology in Hematologic Malignancies [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/TCIA.AXH3-T579

Usage

Training

1. Prepare your data and add it to specific dir.
2. After this do some modifications in ./experiments/5_experiment.ipynb where you can add your path to data
3. Run all JupyterNotebook cells (Attention! You need a good GPU to train all models)
4. You will get training models and interpreted image examples

System usage

1. Move your trained models to ./models/ dir (you should create it!).
2. Run docker-compose up

This command runs back-end and front-end containers on specific ports:

• FastAPI back-end endpoints on http://0.0.0.0:8082/docs/
• React front-end on http://0.0.0.0:3000

Developing

All code for back-end and front-end are available in appropriate directories.