Merge pull request #222 from vreuter/vr/dont-checkpoint-nofailed-stage

Don't checkpoint a nofail stage when it's nofailed
databio · May 7, 2024 · e38483e · e38483e
2 parents e15cabf + 0edf2f2
commit e38483e
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/pypiper/pipeline.py b/pypiper/pipeline.py
@@ -336,8 +336,9 @@ def run(self, start_point=None, stop_before=None, stop_after=None):
                 stage.run()
             except Exception as e:
                 self.manager._triage_error(e, nofail=stage.nofail)
+            else:
+                self.checkpoint(stage)
             self.executed.append(stage)
-            self.checkpoint(stage)
 
         # Add any unused stages to the collection of skips.
         self.skipped.extend(self._stages[stop_index:])