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Fixes #64
Adds enhancement #65
For #64, note that the start and core wiggles will be shifted by 1 since we are converting from bed files(0 based) to wiggles (1 based). The npy files are not shifted so the start and core positions will be 1 less than the wiggle counter parts.
However, because a bed file's end positions are 1 based, no shifting is done for the ends. Therefore, the npy and wig start positions for the end files should be the same.