Update 05-create-profiles.md (#72)

cytomining · Dec 5, 2022 · 803e18c · 803e18c
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commit 803e18c
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diff --git a/05-create-profiles.md b/05-create-profiles.md
@@ -98,6 +98,7 @@ python3 pycytominer/cyto_utils/collate_cmd.py ${BATCH_ID}  pycytominer/cyto_util
 
 ```{note}
 `collate_cmd.py` does not recreate the SQLite backend if it already exists in the local cache. Add `--overwrite` flag to recreate.
+If your SQLite creation succeeded but you ran into issues during aggregation, rerunning with `--aggregate-only` will allow you to rerun just that sub-step.
 ```
 
 ```{note}