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Reimplement predict library#219

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RalfG merged 15 commits intov4.0.0compomics/ms2pip:v4.0.0from reimplement-predict-librarycompomics/ms2pip:reimplement-predict-libraryCopy head branch name to clipboardMay 8, 2024

+1,010-1,047

Commits

Commits on May 3, 2024

• Initial restructuring of fasta2speclib for predict-library

  RalfG

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Commits on May 6, 2024

• working predict_library and csv output

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Commits on May 7, 2024

• Functional .msp output

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• unset normalization defaults

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• Continue predict-library implementation; add tests

  RalfG

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• search_space: Add docs, better define api; restructure

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• Merge branch 'reimplement-predict-library' of https://github.com/compomics/ms2pip_c into reimplement-predict-library

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Commits on May 8, 2024

• Merge branch 'v4.0.0' of https://github.com/compomics/ms2pip_c into reimplement-predict-library

  RalfG

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• Implement spectrum-output for predict-library

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• Avoid memory issues by converting to Peptidoforms lazily

  RalfG

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• Remove obsolete tests; fix search space test imports

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• CI: Reinstate tests

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• Remove unused import; clean up test imports

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• Fix test workflow

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• Fix search_space_test

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