Merge pull request #166 from GavinHuttley/develop #195

	name: Format code using ruff
	# modified from https://towardsdatascience.com/black-with-git-hub-actions-4ffc5c61b5fe
	# caching https://stackoverflow.com/questions/59127258/how-can-i-use-pip-cache-in-github-actions
	# black integration https://black.readthedocs.io/en/stable/integrations/github_actions.html
	# isort integration https://pycqa.github.io/isort/docs/configuration/github_action.html

	# copied from cogent3/cogent3/.github
	on:
	push:
	branches-ignore:
	- master
	pull_request:
	branches-ignore:
	- master

	jobs:
	linters:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.12'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install tomli
	export ruff_version=$(python -c 'import tomli; print([line for line in tomli.load(open("pyproject.toml","rb"))["project"]["optional-dependencies"]["dev"] if "ruff" in line][0])')
	echo "Click version: ruff_version"
	python -m pip install $ruff_version
	- name: Format code using ruff
	run: ruff check --fix-only . && ruff format .
	- name: Commit changes
	uses: EndBug/add-and-commit@v9
	with:
	author_name: ${{ github.actor }}
	author_email: ${{ github.actor }}@users.noreply.github.com
	message: "STY: pre-commit linting with ruff"
	add: "."

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