minor fix

cmkobel · Jul 23, 2024 · aca8b1b · aca8b1b
1 parent 22cde7d
commit aca8b1b
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diff --git a/config/config.yaml b/config/config.yaml
@@ -31,7 +31,6 @@ set_bakta--translation-table: 11
 set_bakta--gram: "?"
 
 set_busco--tar: "" # flag
-set_busco--mode: "protein"
 set_busco--auto-lineage-prok: "" # flag
 
 set_eggnog--genepred: prodigal

diff --git a/workflow/rules/sample_quality_control.smk b/workflow/rules/sample_quality_control.smk
@@ -113,6 +113,7 @@ rule busco:
                 --force \
                 --skip_bbtools \
                 --download_path {params.database_path} \
+                --mode protein \
                 {params.passthrough_parameters} \
                 --offline || (>&2 echo "comparem2: Busco failed internally.")