Update release.yml #2
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| name: release_test1 | ||
| on: | ||
| push: | ||
| paths: | ||
| - '*' | ||
| jobs: | ||
| create-env: | ||
| name: ${{ matrix.os }} | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [ubuntu-latest] | ||
| steps: | ||
| - name: checkout repository | ||
| uses: actions/checkout@v2 | ||
| - name: create environment with mamba | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| mamba-version: "*" | ||
| channels: conda-forge,bioconda,defaults | ||
| auto-activate-base: false | ||
| activate-environment: asscom2 | ||
| environment-file: .github/workflows/env.yaml | ||
| - name: check solution | ||
| run: | | ||
| mamba env export | ||
| - name: test installation | ||
| run: | | ||
| which asscom2 | ||
| asscom2 --version | ||
| asscom2 --help | ||
| - name fast dry run | ||
| run: | | ||
| asscom2 --config input_genomes="tests/E._faecium/*.fna" --until fast --dry-run | ||
