Add updated EFK datasets. #31

chguiterman · Apr 7, 2020 · 74d9709 · 74d9709
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diff --git a/R/data.R b/R/data.R
@@ -6,6 +6,26 @@
 #'   Dates range from 1776-1987.
 "ef_h"
 
+#' East Fork Jemez River Douglas-fir
+#'
+#' Western spruce budworm host series
+#'
+#' @format An `rwl` object with 37 tree-level series, standardized in ARSTAN.
+#'   Dates range from 1776-1987.
+#'
+#' @source \url{https://esajournals.onlinelibrary.wiley.com/doi/10.2307/2937153}
+"efk_h"
+
+#' Baca ponderosa pine chornology
+#'
+#' Non-host pair chronology for East Fork Douglas-fir `efk_h`
+#'
+#' @format An `rwl` chronology object with 1 series, 1612-1987. Standardized in
+#'   ARSTAN.
+#'
+#' @source \url{https://esajournals.onlinelibrary.wiley.com/doi/10.2307/2937153}
+"efk_nh"
+
 #' East Fork Jemez area ponderosa pine
 #'
 #' Non-host pair chronology for East Fork Douglas-fir `ef_h`
@@ -21,13 +41,27 @@
 #' @format A `defol` object with 2500 rows and 5 columns
 "ef_defol"
 
+#' East Fork defol object
+#'
+#' Produced by running `defoliate_trees(efk_h, efk_nh, series_end_event = TRUE)`
+#'
+#' @format A `defol` object with 5142 rows and 5 columns
+"efk_defol"
+
 #' East Fork outbreak object
 #'
 #' Produced by running `outbreak(ef_defol)`
 #'
 #' @format An `outbreak` object with 221 rows and 9 columns
 "ef_obr"
 
+#' East Fork outbreak object
+#'
+#' Produced by running `outbreak(efk_defol)`
+#'
+#' @format An `outbreak` object with 221 rows and 9 columns
+"efk_obr"
+
 #' Demi John Douglas-fir
 #'
 #' Western spruce budworm host series

diff --git a/data/efk_defol.rda b/data/efk_defol.rda
diff --git a/data/efk_h.rda b/data/efk_h.rda
diff --git a/data/efk_nh.rda b/data/efk_nh.rda
diff --git a/data/efk_obr.rda b/data/efk_obr.rda
diff --git a/inst/extdata/BAC2.CRN b/inst/extdata/BAC2.CRN
@@ -1,92 +1,39 @@
 BAC2  Std: BAC2 mean series                                      [16May17-1513]
-     376=N    1612=I BAC2 Std                                        -5(13F6.0)~
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- 75992 42077 96772 95565105578128640123816126448109695145386171023145055
-     374=N    1614=I BAC2 Res                                        -5(13F6.0)~
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-117655104327110341128618115625115529 96635135175153164116841
-     381=N    1607=I BAC2 Ars                                        -5(13F6.0)~
-162984103157 89514 86984 55820112001103008 88760 84563 60288118266 94413 50490
- 89915123756 62321 54357 18236 75764 78383 98911 42793136328130320 81912 62720
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+BAC2 S16129990  09990  01630  11032  1 895  1 870  1 558  11120  11030  1 557  1
+BAC2 S1620 883  11290  1 727  1 463  1 177  1 764  11021  11240  1 694  11286  1
+BAC2 S16301359  1 684  1 442  11579  11522  11934  11828  11641  1 966  11402  1
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+BAC2 S1650 585  11320  11287  1 712  1 739  1 965  1 974  11153  1 704  1 641  1
+BAC2 S16601106  11163  11082  1 991  1 547  11040  1 907  1 452  1 595  1 589  1
+BAC2 S1670 765  1 744  1 888  11032  11508  11126  1 658  1 741  1 897  11162  1
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+BAC2 S16901138  11159  11402  11314  11223  11416  1 563  11350  1 917  11488  1
+BAC2 S1700 797  11252  1 672  1 963  1 496  1 943  11435  1 989  11237  1 810  1
+BAC2 S17101290  1 899  11022  11042  1 823  1 747  1 792  1 882  11180  1 648  1
+BAC2 S17201302  11177  11298  11239  11062  11388  11550  11039  11103  1 251  1
+BAC2 S1730 692  1 950  11093  1 830  11330  1 461  1 943  1 547  1 640  1 325  1
+BAC2 S1740 819  1 827  1 846  11095  11144  11086  11434  11559  1 325  11405  1
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+BAC2 S1820 552  1 825  1 108  1 497  1 537  1 811  1 965  1 945  11333  1 753  1
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