feat: Creating standardized tomo config #354
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manasaV3
changed the title
manasaV3
commented
Nov 8, 2024
| tilt_offset: 0 | ||
| sources: | ||
| - source_glob: | ||
| list_glob: '{dataset_name}_{run_name}/*/outputs/aretomo/reconstruct_only/{run_name}.aln' |
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Updates the list_glob from {dataset_name}_{run_name}/{voxel_spacing_name}/outputs/aretomo/reconstruct_only/{run_name}.aln' to {dataset_name}_{run_name}/*/outputs/aretomo/reconstruct_only/{run_name}.aln' as the voxel_spacing is not a parent of the alignment and therefore will not be available at the time of this glob operation.
Confirmed with Utz that we won't have more than one voxel spacing available for a run as the voxel spacing is generated using this logic. :)
| datasets: | ||
| - sources: | ||
| - destination_glob: | ||
| list_glob: '{output_path}/*' |
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Added support for output_path in the glob variables.
uermel
approved these changes
Nov 8, 2024
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Relates to
Description
Updates the dep 10311 config file for globs
The config was tested for
10015/pda2022-01-23-103/in the test bucket.