Gets CRISPR read counts from cram files and merges readcounts from multiple read count files.
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To see the full usage:
crisprReadCounts --help
VERSION=X.X.X
pip install https://github.com/cancerit/crisprReadCountsPy/archive/${VERSION}.tar.gz
cd $PROJECTROOT
hash virtualenv || pip3 install virtualenv
virtualenv -p python3 env
source env/bin/activate
pip install -r requirements.txt
python setup.py develop # so bin scripts can find module
source env/bin/activate # if not already in env
pip install -r test-requirements.txt
Copyright (c) 2014-2020 Genome Research Ltd.
Author: CASM/Cancer IT [email protected]
This file is part of crisprReadCounts.
crisprReadCounts is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see http://www.gnu.org/licenses/.
- The usage of a range of years within a copyright statement contained within this distribution should be interpreted as being equivalent to a list of years including the first and last year specified and all consecutive years between them. For example, a copyright statement that reads ‘Copyright (c) 2005, 2007- 2009, 2011-2012’ should be interpreted as being identical to a statement that reads ‘Copyright (c) 2005, 2007, 2008, 2009, 2011, 2012’ and a copyright statement that reads ‘Copyright (c) 2005-2012’ should be interpreted as being identical to a statement that reads ‘Copyright (c) 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012’."