Feature/revcomp #110
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Feature/revcomp #110
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3.6.1 - Corrected logic of `FF019` and `FF020` to account for cases where FC > FD
3.6.1 - Corrected logic of `FF019` and `FF020` to account for cases where FC > FD
…arge an impact on legacy data
call checking against BWA more robust, lots of testing to do
Fix bug in BWA indel correlation counting
…eation of relevant data, tests implemented
Feature/range based normal panel
Finalise release
applied masking to pindel output
- Masking of pindel calls where ref == alt implemented to remove invalid calls from pindel output - Core pindel fix required to resolve the underlying problem
- Masking of pindel calls where ref == alt implemented to remove invalid calls from pindel output - Core pindel fix required to resolve the underlying problem
Feature/ignore contigs file
- Add commandline option for file containing exclude contigs
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Only relevant file is vcfBlatAugment