Merge branch 'dev'

Docs/ChangeLog.md

@@ -1,3 +1,9 @@
+# Version: 1.118.3
+## Date: 2024-11-19
+### Changes:
+- Change: changed the title of the figure of the basic plot part to make the title more clear.
+
+
 # Version: 1.118.2
 ## Date: 2024-11-8
 ### Changes:

README.md

@@ -13,6 +13,12 @@ MetaX also features <u>statistical modules</u> and <u>plotting tools</u> for ana
 
 ![OTF_Structure](https://github.com/byemaxx/MetaX/raw/main/Docs/MetaX_Cookbook.assets/OTF_Structure.png)
 
+## OTF Analyzer
+
+The Tools in OTF Analyzer
+
+![compostion](https://github.com/byemaxx/MetaX/raw/main/Docs/MetaX_Cookbook.assets/composition.png)
+
 ## OTFs Network
 
 Linking Taxa and Functions in different levels of the hierarchy, and different functional categories. e.g., **Species-KO**, **Genus-CAZy**, **Phylum-EC**, etc.

metax/taxafunc_ploter/basic_plot.py

@@ -78,7 +78,7 @@ def plot_taxa_stats_pie(self, theme:str = 'Auto', res_type = 'pic', font_size =
             a.set_text(f'{count[i]}')
 
 
-        plt.title('Number of identified peptides in different taxa level', fontsize=font_size+2, loc='center', fontweight='bold')
+        plt.title('Number of identified peptides at different levels', fontsize=font_size+2, loc='center', fontweight='bold')
         plt.setp(autotexts, size=font_size,  color="white")
         plt.setp(texts, size=font_size)
 
@@ -112,8 +112,8 @@ def plot_taxa_number(self, peptide_num = 1, theme:str = 'Auto', res_type = 'pic'
             # set the label of the bar, and fontsize
             ax.bar_label(i, fontsize=font_size)
 
-        ax.set_title(f'Number of taxa in different taxa level (Peptide number >= {peptide_num})', fontsize=font_size+2, fontweight='bold')
-        ax.set_xlabel('Taxa level', fontsize=font_size+2)
+        ax.set_title(f'Number of taxa at different levels (Peptide number >= {peptide_num})', fontsize=font_size+2, fontweight='bold')
+        ax.set_xlabel('Taxonomic level', fontsize=font_size+2)
         ax.set_ylabel('Number of taxa', fontsize=font_size+2)
         # set font size of xtikcs and yticks
         ax.set_xticklabels(ax.get_xticklabels(), fontsize=font_size)

metax/utils/version.py

@@ -1,2 +1,2 @@
-__version__ = '1.118.2'
+__version__ = '1.118.3'
 API_version = '3'

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "MetaXTools"
-version = "1.118.2"
+version = "1.118.3"
 description = "MetaXTools is a novel tool for linking peptide sequences with taxonomic and functional information in Metaproteomics."
 readme = "README_PyPi.md"
 license = { text = "NorthOmics" }