- Fix: Fixed the filter of pvalue or padj option not work for functio…

…nal redundancy analysis in T-Test part.

Docs/ChangeLog.md

@@ -1,5 +1,10 @@
+# Version: 1.115.3
+## Date: 2024-10-04
+### Changes:
+- Fix: Fixed the filter of pvalue or padj option not work for functional redundancy analysis in T-Test part.
+
 # Version: 1.115.2
-## Date: 2024-10-03
+## Date: 2024-10-04
 ### Changes:
 - New: added a new Normalization method: "Trace Shifting" for the data preprossing.
 

metax/gui/main_gui.py

@@ -4881,12 +4881,13 @@ def t_test(self):
             try:
                 self.pushButton_ttest.setEnabled(False)
                 group_list = [group1, group2]
-                table_names = []
+                table_names = [] # reset table_names as empty list
                 if df_type == 'Significant Taxa-Func'.lower():
                     p_value = self.doubleSpinBox_top_heatmap_pvalue.value()
                     p_value = round(p_value, 4)
+                    p_type = self.comboBox_top_heatmap_p_type.currentText()
 
-                    ttest_sig_tf_params = {'group_list': group_list, 'p_value': p_value, 'condition': condition}
+                    ttest_sig_tf_params = {'group_list': group_list, 'p_value': p_value, 'condition': condition, "p_type": p_type}
                     self.run_in_new_window(self.tfa.CrossTest.get_stats_diff_taxa_but_func, callback= self.callback_after_ttest, **ttest_sig_tf_params)
 
 

metax/taxafunc_analyzer/analyzer_utils/cross_test.py

@@ -598,7 +598,7 @@ def get_stats_diff_taxa_but_func(self, group_list: list|None = None, p_value: fl
                                      condition:list|None =None, p_type: str = 'padj'
                                      ) -> tuple:
         p_col_name = 'pvalue' if p_type == 'pvalue' else 'padj'
-
+        print(f"Using [{p_col_name}] for filtering")
         # calculate the test result if not given
         if taxa_res_df is None or func_res_df is None or taxa_func_res_df is None:
             print("No test result given, calculating the test result first")

metax/utils/version.py

@@ -1,2 +1,2 @@
-__version__ = '1.115.2'
+__version__ = '1.115.3'
 API_version = '3'

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "MetaXTools"
-version = "1.115.2"
+version = "1.115.3"
 description = "MetaXTools is a novel tool for linking peptide sequences with taxonomic and functional information in Metaproteomics."
 readme = "README_PyPi.md"
 license = { text = "NorthOmics" }