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CDCBI contract ended, change genome names
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dpark01 committed Mar 14, 2022
1 parent 9347fc6 commit fe52132
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pipes/WDL/tasks/tasks_sarscov2.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -379,7 +379,7 @@ task crsp_meta_etl {
String prefix_map = '{"Broad Institute Clinical Research Sequencing Platform": "CRSP_", "Massachusetts General Hospital": "MGH_", "Rhode Island Department of Health": "RIDOH_", "Biobot Analytics": "Biobot_", "Flow Health":"FlowHealth_", "Colorado Mesa University":"CMU_", "Capture Diagnostics Hawaii":"Capture_", "Boston Medical Center":"BMC_", "University of Central Florida":"UCF_"}'
String org_name_map = '{"Broad Institute Clinical Research Sequencing Platform": "Broad Institute Clinical Research Sequencing Platform", "Massachusetts General Hospital": "Massachusetts General Hospital", "RIDOH": "Rhode Island Department of Health", "BIOBOT": "Biobot Analytics", "FLOW":"Flow Health", "MESA":"Colorado Mesa University", "CAPTURE":"Capture Diagnostics Hawaii", "BUBMC":"Boston Medical Center", "UCF":"University of Central Florida"}'
String allowed_purposes = '["Baseline surveillance (random sampling)", "Targeted surveillance (non-random sampling)", "Screening for Variants of Concern (VOC)", "Longitudinal surveillance (repeat sampling of individuals)", "Vaccine escape surveillance", "Cluster/Outbreak investigation"]'
String sequencing_lab_prefix = 'CDCBI'
String sequencing_lab_prefix = 'Broad'
String docker = "quay.io/broadinstitute/py3-bio:0.1.2"
}
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