Code

Dp kidney#549

Code

Merged

daniellepace merged 21 commits intomasterbroadinstitute/ml4h:masterfrom dp_kidneybroadinstitute/ml4h:dp_kidneyCopy head branch name to clipboardJan 12, 2024

+168-68

Commits

Commits on Dec 5, 2023

• add pancreas

  lucidtronix

  committed
  57e43c4

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• add pancreas

  lucidtronix

  committed
  943909c

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Commits on Dec 6, 2023

• use pancreas for pngs

  daniellepace

  committed
  804015b

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Commits on Dec 7, 2023

• WIP

  daniellepace

  committed
  9181099

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Commits on Dec 8, 2023

• New manifest file

  daniellepace

  committed
  8753ece

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Commits on Dec 13, 2023

• Fix view creation

  daniellepace

  committed
  b9321cb

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Commits on Dec 14, 2023

• Prevent tensorize from overwriting

  daniellepace

  committed
  afaab76

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Commits on Dec 15, 2023

• Add tensormaps for pancreas mris

  daniellepace

  committed
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• Add elements of Marcus's setup - L2 weight_decay and cosine decay learning rate schedule

  daniellepace

  committed
  e7cd9f0

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• FIX: Fix bug when a generator has 0 ids

  daniellepace

  committed
  3050729

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• FIX: Fix bug when key_prefix is not given

  daniellepace

  committed
  4a951e9

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• ENH: Allow for no testing during model training

  daniellepace

  committed
  e6684e4

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Commits on Dec 19, 2023

• FIX: Fix typo

  daniellepace

  committed
  78839dd

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• FIX: Fix parser for boolean arguments

  daniellepace

  committed
  6e70e83

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Commits on Dec 20, 2023

• STYLE: Remove unneeded comment

  daniellepace

  committed
  4b86543

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• WIP

  daniellepace

  committed
  05c4f77

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Commits on Jan 10, 2024

• FIX error (which kills a thread and prevents subsequent pngs from being written) if the image size is wrong

  daniellepace

  committed
  ca2e89b

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• Tensorize can create empty tensors if there are no good series, making you think it's working when it isn't. At least give a warning

  daniellepace

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Commits on Jan 11, 2024

• Don't commit code to interpet this specific manifest_tsv file

  daniellepace

  committed
  8eaa344

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Commits on Jan 12, 2024

• STYLE: Rename intensity_thresh_perc -> intensity_thresh_percentile

  daniellepace

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  fa9303b

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• Merge branch 'master' into dp_kidney

  daniellepace

  authored
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