Adding Dual License

[gwaybio]

We have chosen to dual license this repository. The code will be licensed using BSD-3 Clause while the underlying data, results, and figures will be licensed with CC0 1.0

This PR adds the two license files and adds a license note in the README.

The permissive open source nature of the project will enable rapid sharing of the data, increased speed of method development in Cell Painting projects, and will increase participation of people around the world who find this data. Science progresses faster and more fairly without access barriers.

Closes #27

[shntnu]

How about we do things in this order (feel free to edit this) @gwaygenomics

• Get all the Level 3-5 data on master @gwaygenomics
• Create a manifest file linking to the files living in this repo @shntnu Create manifest file for clue.io #33
• Send the manifest to clue.io (but we don't need to wait for the data to go up on clue.io) @gwaygenomics
• Update the README in this PR, citing clue.io as the data source @gwaygenomics
• Share this PR with clue.io @shntnu
• Get their sign off @shntnu
• approve this PR @shntnu
• Merge PR @gwaygenomics

[gwaybio]

let's do it! One small note is that we may not necessarily want to block ourselves by waiting on clue. If we get a sense that it will take long for them to update clue.io and sign off on this PR, we can always open a new PR.

Also, can we have clue sign off on this PR now?

[shntnu]

may not necessarily want to block ourselves by waiting on clue.

The only step blocking is this one, correct? "Share this PR with clue.io and get their sign off then approve this @shntnu" None of the others are.

This one "Update the README in this PR, citing clue.io as the data source @gwaygenomics" is not blocking because we can always cite clue.io as the data generators in the README but have the actual data go up later

[shntnu]

• Create a manifest file linking to the files living in this repo @shntnu

@gwaygenomics Can you confirm that SQ00015153_augmented.csv.gz will be available at this location:

https://raw.githubusercontent.com/broadinstitute/lincs-cell-painting/master/profiles/2016_04_01_a549_48hr_batch1/SQ00015153/SQ00015153_augmented.csv.gz

[gwaybio]

as per #23 I add a backend folder in there

A more accurate link is:

https://raw.githubusercontent.com/broadinstitute/lincs-cell-painting/master/profiles/backend/2016_04_01_a549_48hr_batch1/SQ00015153/SQ00015153_augmented.csv.gz

Edit - I just saw cytomining/profiling-handbook#54 (comment)! so yes, your link is correct.

The other files that exist in this structure have the format (with the plate prefix syntax)

1. .csv.gz
2. _augmented.csv.gz
3. _normalized.csv.gz
4. _normalized_dmso.csv.gz
5. _normalized_feature_select.csv.gz
6. _normalized_feature_select_dmso.csv.gz

[gwaybio]

@shntnu - note the edit to the path above

[shntnu]

@gwaygenomics can you go ahead and sync this fork?

You do this, correct?:
https://help.github.com/en/github/collaborating-with-issues-and-pull-requests/syncing-a-fork

[shntnu]

Sync after merging this #45

[shntnu]

Approved after my email to Aravind on Jul 2 2020

[shntnu]

@gwaygenomics All set for you to merge after syncing this fork as needed

[gwaybio]

😎