hack to work around issue with duplicated cell_line_name

portal-backend/loader/depmap_model_loader.py

@@ -28,6 +28,16 @@ def _coerce_na(value):
         return value
 
 
+def temp_cell_line_name_fixup(model_id, cell_line_name):
+    if model_id == "ACH-000010":
+        log.warning(
+            "Nulling out cell line name from ACH-000010 because labeled as having the same name as ACH-000015. In the next release, we'll fix the dataset and then we can remove this hack"
+        )
+        cell_line_name = None
+
+    return cell_line_name
+
+
 def insert_cell_lines(df):
     """
     Is a separate method so this is testable
@@ -40,7 +50,7 @@ def insert_cell_lines(df):
 
         cell_line = CellLine.get_by_depmap_id(model_id)
 
-        cell_line_name = row["CellLineName"]
+        cell_line_name = temp_cell_line_name_fixup(model_id, row["CellLineName"])
         oncotree_primary_disease = row["OncotreePrimaryDisease"]
         oncotree_subtype = row["OncotreeSubtype"]
         oncotree_code = _coerce_na(row["OncotreeCode"])