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DEGA-22-clahe-image-preprocessing#39

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huanlity wants to merge 19 commits intomainbroadinstitute/celldega:mainfrom DEGA-22-clahe-image-preprocessingbroadinstitute/celldega:DEGA-22-clahe-image-preprocessingCopy head branch name to clipboard

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Commits on Nov 15, 2024

• using cv2 to improve speed

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Commits on Nov 18, 2024

• load image from memory in pyvips

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• remove CLAHE

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• add check_and_convert_16_to_8_bit fx

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Commits on Nov 19, 2024

• restore CLAHE and find the optimal parameter

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• add technology arg to switch on-off CLAHE

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• update merscope nb

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Commits on Nov 20, 2024

• remove the switch as Xenium can also use CLAHE

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• update merscope nb

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• add Xenium pre-processing nb for benchmarking data

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• Merge branch 'main' into DEGA-22-clahe-image-preprocessing

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• added open-cv-python to the requirements toml

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Commits on Nov 27, 2024

• do clahe outside of pyvips

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• simplify tile_grid_size arg

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• Merge branch 'main' of github.com:broadinstitute/celldega into DEGA-22-clahe-image-preprocessing

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• change default tile_grid_size to 10

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• clean

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Commits on Dec 2, 2024

• update nbs

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• Merge branch 'DEGA-22-clahe-image-preprocessing' of github.com:broadinstitute/celldega into DEGA-22-clahe-image-preprocessing

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