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DEGA-106-Segmentation-Metrics #36

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DEGA-106-Segmentation-Metrics #36

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7d4e472
setting up boiler plate
cornhundred Oct 31, 2024
d9a7241
metrics addition + pre-process nb corrections
jaspreetishar Nov 15, 2024
9158935
remove comments
jaspreetishar Nov 15, 2024
03b913a
column name fix
jaspreetishar Nov 15, 2024
7e85a6c
clean up
jaspreetishar Nov 15, 2024
1d4459a
added extra metrics info as comments
jaspreetishar Nov 19, 2024
4e39919
included gene specific metrics
jaspreetishar Nov 20, 2024
95956a1
remove image intensity calc, clean up segmentation_qc.ipynb
jaspreetishar Nov 20, 2024
4e8f4ae
qc module name update
jaspreetishar Nov 20, 2024
172a1fa
xenium-default support, remove cells per um2 metric, concise metric n…
jaspreetishar Nov 22, 2024
9fd6060
output address fix, notebook changes
jaspreetishar Nov 26, 2024
f95d06b
working on custom segmentation
jaspreetishar Nov 26, 2024
de4ca6e
Merge branch 'main' into DEGA-106-Segmentation-Metrics
jaspreetishar Nov 26, 2024
cf5a68e
disjoint marker script addition in qc
jaspreetishar Dec 19, 2024
8eb29bf
segmentation_qc notebook clean up
jaspreetishar Dec 19, 2024
92bf616
more qc functions for default xenium results
jaspreetishar Jan 3, 2025
5bdd4bc
pulling changes from main to segmentation metrics branch
jaspreetishar Jan 3, 2025
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