bump beast version v1.10.4 -> v1.10.5pre (#4)

* BEAST 1.10.4 -> 1.10.5pre

* account for different pre-release package URL

README.md

@@ -20,7 +20,7 @@ Usage:
         Docker images have been built for several versions of BEAST.
         The Docker image to be used can be selected by the BEAST_VERSION environment variable.
         For example:
-          BEAST_VERSION='1.10.4' dsub_beast.sh gs://path/to/in.xml gcp-project-name num_gpus [beagle_order]
+          BEAST_VERSION='1.10.5pre' dsub_beast.sh gs://path/to/in.xml gcp-project-name num_gpus [beagle_order]
         For available versions of BEAST, see the tags on Quay.io:
           https://quay.io/repository/broadinstitute/beast-beagle-cuda?tab=tags
         If BEAST_VERSION is not specified the 'latest' tag will be used.

dsub_beast.sh

@@ -41,7 +41,7 @@ function print_usage(){
   echo "        Docker images have been built for several versions of BEAST."
   echo "        The Docker image to be used can be selected by the BEAST_VERSION environment variable."
   echo "        For example:"
-  echo "          BEAST_VERSION='1.10.4' $(basename $0) gs://path/to/in.xml gcp-project-name num_gpus [beagle_order]"
+  echo "          BEAST_VERSION='1.10.5pre' $(basename $0) gs://path/to/in.xml gcp-project-name num_gpus [beagle_order]"
   echo "        For available versions of BEAST, see the tags on Quay.io:"
   echo "          https://quay.io/repository/broadinstitute/beast-beagle-cuda?tab=tags"
   echo "        If BEAST_VERSION is not specified the 'latest' tag will be used."

install-beagle.sh

@@ -4,7 +4,7 @@ set -e -o pipefail
 
 cd /opt/docker
 
-# beagle 3.1.2, known working with beast 1.10.4
+# beagle 3.1.2, known working with beast 1.10.5pre
 git clone --depth=1 --branch="v3.1.2" https://github.com/beagle-dev/beagle-lib.git
 cd beagle-lib
 

install-beast.sh

@@ -1,8 +1,10 @@
 #!/bin/bash
 
-beast_version="1.10.4"
+beast_version="1.10.5pre"
+# uncomment when out of pre-release:
+#wget --quiet https://github.com/beast-dev/beast-mcmc/releases/download/v${beast_version}/BEASTv${beast_version}.tgz
+wget --quiet https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.5pre1/BEASTv1.10.5pre.tgz -O BEASTv${beast_version}.tgz
 
-wget --quiet https://github.com/beast-dev/beast-mcmc/releases/download/v${beast_version}/BEASTv${beast_version}.tgz
 tar -xzpf BEASTv${beast_version}.tgz
 rm BEASTv${beast_version}.tgz