fix CanarieAPI config to support Python 3.x #284

fmigneault · 2023-02-01T00:02:50Z

Overview

Please include a summary of the changes and which issues are fixed.

Please also include relevant motivation and context.

List any dependencies that are required for this change.

Breaking changes

CanarieAPI: update to 0.7.1.
- The Docker running CanarieAPI is now using Python 3 (since 0.4.x tags).
  Configurations need to be updated if any specific Python 2 definitions were used.
  See 2to3 to help migrate configurations automatically if necessary.
- Update the CanarieAPI configuration to use
  Python 3.x executable code.

Changes

CanarieAPI: update to 0.7.1.
- The server node now provides a generic server configuration for the current platform definition.
- Added multiple missing docuementation references for all the services included within CanarieAPI configurations.
- With new CanarieAPI version, a slightly improved UI with more service details are provided for the active server:

Add optional variables witht defaults to define reference Docker image version tags.

Following optional variables are defined by default. These are used as reference in the respective Docker compose
service definition of these components, as well as in their CanarieAPI configuration to retrieve the release time
of the tag, and refer to relevant URL references as needed.
- CATALOG_VERSION
- FINCH_VERSION
- FLYINGPIGEON_VERSION
- GEOSERVER_VERSION
- HUMMINGBIRD_VERSION
- MALLEEFOWL_VERSION
- RAVEN_VERSION

Fixes:

CanarieAPI: update to 0.7.1.
- Fixes an AttributeError raised due to misconfiguration of the Web Application with Flask 2.x definitions
  (relates to Ouranosinc/CanarieAPI#10).
- Skip over 0.4.x, 0.5.x, 0.6.x versions to avoid issue related to cron job monitoring and log parser
  command failures in order to collect configured service statistics and statuses
  (see also Ouranosinc/CanarieAPI#14).
Weaver: update CanarieAPI monitoring definitions
- Move monitoring of public endpoint under [optional-components/canarie-api-full-monitoring][canarie-monitor].
- Add monitoring of private endpoint by default when using Weaver component.
Cowbird: update CanarieAPI monitoring definitions
- Add monitoring of public endpoint under [optional-components/canarie-api-full-monitoring][canarie-monitor].
- Add public Magpie permission on Cowbird entrypoint only to allow its monitoring.

Additional Information

Resolves the following log error.

proxy              | [2023-01-31 19:37:01 +0000] [37] [DEBUG] GET /canarie/
proxy              | [2023-01-31 19:37:01,708] [37] [INFO] app_object : Disconnecting from database
proxy              | [2023-01-31 19:37:01,709] [37] [DEBUG] app_object : Using db filename : /opt/local/src/CanarieAPI/stats.db
proxy              | [2023-01-31 19:37:01 +0000] [37] [DEBUG] Closing connection. 
proxy              | [2023-01-31 19:37:02 +0000] [37] [DEBUG] GET /canarie/background.jpg
proxy              | [2023-01-31 19:37:02,176] [37] [INFO] app_object : Disconnecting from database
proxy              | [2023-01-31 19:37:02,176] [37] [DEBUG] app_object : Using db filename : /opt/local/src/CanarieAPI/stats.db
proxy              | [2023-01-31 19:37:02 +0000] [37] [ERROR] Error handling request /canarie/background.jpg
proxy              | Traceback (most recent call last):
proxy              |   File "/usr/local/lib/python2.7/dist-packages/gunicorn/workers/async.py", line 56, in handle
proxy              |     self.handle_request(listener_name, req, client, addr)
proxy              |   File "/usr/local/lib/python2.7/dist-packages/gunicorn/workers/ggevent.py", line 152, in handle_request
proxy              |     super(GeventWorker, self).handle_request(*args)
proxy              |   File "/usr/local/lib/python2.7/dist-packages/gunicorn/workers/async.py", line 107, in handle_request
proxy              |     respiter = self.wsgi(environ, resp.start_response)
proxy              |   File "/usr/local/lib/python2.7/dist-packages/flask/app.py", line 1997, in __call__
proxy              |     return self.wsgi_app(environ, start_response)
proxy              |   File "/opt/local/src/CanarieAPI/canarieapi/reverse_proxied.py", line 33, in __call__
proxy              |     return self.app(environ, start_response)
proxy              |   File "/usr/local/lib/python2.7/dist-packages/flask/app.py", line 1985, in wsgi_app
proxy              |     response = self.handle_exception(e)
proxy              |   File "/usr/local/lib/python2.7/dist-packages/flask/app.py", line 1532, in handle_exception
proxy              |     handler = self._find_error_handler(InternalServerError())
proxy              |   File "/usr/local/lib/python2.7/dist-packages/flask/app.py", line 1449, in _find_error_handler
proxy              |     .get(code))
proxy              |   File "/usr/local/lib/python2.7/dist-packages/flask/app.py", line 1440, in find_handler
proxy              |     handler = handler_map.get(cls)
proxy              | AttributeError: 'function' object has no attribute 'get'

The above problem lead to unresponsive CanarieAPI, which in turn caused the platform to fail responding with successful monitoring statuses for requests toward the configured services, which in turn, caused the stack to never completely boot. When the stack failed to boot, the End2End Test Results (example: #283 (comment)) could not run due to the unresponsive instance, which is the cause of the incomplete output:

Tests URL :

NOTEBOOK TEST RESULTS
   
````
</code>
``

To Do (in follow-up PRs)

remove deprecated configs deleted in Remove pavics-datacatalog from stack #287
remove deprecated configs deleted in Remove ncwms #291
remove deprecated configs deleted in Remove malleefowl server from stack #292

crim-jenkins-bot · 2023-02-01T00:24:21Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac/54/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-88.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-01T01:33:56Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1159/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-154.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

fmigneault · 2023-02-01T18:34:50Z

run tests

using required https://github.com/Ouranosinc/CanarieAPI/releases/tag/0.4.4 now deployed

crim-jenkins-bot · 2023-02-01T18:55:38Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac/55/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-154.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-01T18:55:41Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1160/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-154.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

tlvu

The above problem lead to unresponsive CanarieAPI, which in turn caused the platform to fail responding with successful monitoring statuses for requests toward the configured services, which in turn, caused the stack to never completely boot.

It's funny that the error happens during the E2E test. I don't remember seeing this error on our production instance.

Missing CHANGES.md update, small changes to revert and the PR description needs a little review I think.

birdhouse/config/canarie-api/docker_configuration.py.template

crim-jenkins-bot · 2023-02-01T19:51:52Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1161/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : false
PAVICS_HOST : https://host-140-154.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

tlvu · 2023-02-01T20:01:46Z

Wait, this PR is supposed to fix the E2E? In the latest E2E result, the result still empty!?

fmigneault · 2023-02-01T23:38:29Z

@tlvu While testing, I identified another issue where CanarieAPI is monitored in Jenkins to check that the stack is "ready", but the value it looks for does not exist. There's a PR open that @matprov needs to review and integrate beforehand. Should be fixed soon enough 🤞

…neous support

fmigneault · 2023-02-02T00:24:51Z

run tests

matprov · 2023-02-02T00:35:43Z

@fmigneault Jenkins was restarting while running latest E2E tests, therefore I trigger them again.

run tests

crim-jenkins-bot · 2023-02-02T00:36:09Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac/58/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH :
PAVICS_E2E_WORKFLOW_TESTS_BRANCH :
PAVICS_SDI_BRANCH :

DESTROY_INFRA_ON_EXIT :
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-02T00:37:12Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1164/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-88.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

matprov · 2023-02-02T00:39:18Z

run tests

crim-jenkins-bot · 2023-02-02T00:40:42Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1165/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-88.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-03T05:32:43Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1175/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-03T21:57:57Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1176/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

fmigneault · 2023-02-03T23:49:17Z

Working on a new version to provide more capabilities: Ouranosinc/CanarieAPI#11

With changes in 76743a4, I get the following result on a local instance :

crim-jenkins-bot · 2023-02-03T23:49:27Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1177/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-02-07T00:37:13Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1193/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>

crim-jenkins-bot · 2023-04-19T18:33:39Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1494/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-20.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1086/

NOTEBOOK TEST RESULTS

    
[2023-04-19T17:33:22.835Z] ============================= test session starts ==============================
[2023-04-19T17:33:22.835Z] platform linux -- Python 3.8.16, pytest-7.2.0, pluggy-1.0.0
[2023-04-19T17:33:22.835Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-04-19T17:33:22.835Z] plugins: anyio-3.6.2, dash-2.7.0, nbval-0.9.6, tornasync-0.6.0.post2
[2023-04-19T17:33:22.835Z] collected 268 items
[2023-04-19T17:33:22.835Z] 
[2023-04-19T17:33:32.280Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2023-04-19T17:33:43.468Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  6%]
[2023-04-19T17:33:56.135Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  8%]
[2023-04-19T17:34:06.088Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 11%]
[2023-04-19T17:34:08.759Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 15%]
[2023-04-19T17:45:03.996Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 20%]
[2023-04-19T17:45:06.549Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 20%]
[2023-04-19T17:45:16.593Z] ...............                                                          [ 26%]
[2023-04-19T17:45:27.235Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 27%]
[2023-04-19T17:45:38.397Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 30%]
[2023-04-19T17:45:59.208Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 32%]
[2023-04-19T17:46:01.152Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 32%]
[2023-04-19T17:46:14.381Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 35%]
[2023-04-19T17:46:19.672Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb ....F       [ 37%]
[2023-04-19T17:50:09.587Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 42%]
[2023-04-19T17:51:25.534Z] .............                                                            [ 47%]
[2023-04-19T17:51:27.983Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 49%]
[2023-04-19T17:51:30.575Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 52%]
[2023-04-19T17:52:00.545Z] .................                                                        [ 58%]
[2023-04-19T17:52:08.886Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 60%]
[2023-04-19T17:52:10.802Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 60%]
[2023-04-19T17:52:11.850Z] .FFFFFFFF                                                                [ 64%]
[2023-04-19T17:52:24.473Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 68%]
[2023-04-19T17:52:34.474Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 70%]
[2023-04-19T17:53:17.151Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 79%]
[2023-04-19T17:53:19.705Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 79%]
[2023-04-19T17:53:31.638Z] ......                                                                   [ 81%]
[2023-04-19T17:57:38.254Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 82%]
[2023-04-19T17:58:57.644Z] .............                                                            [ 86%]
[2023-04-19T17:59:15.788Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 87%]
[2023-04-19T18:04:07.257Z] ....s.                                                                   [ 89%]
[2023-04-19T18:04:15.417Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-04-19T18:04:21.247Z] ...                                                                      [ 91%]
[2023-04-19T18:04:36.161Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 91%]
[2023-04-19T18:05:02.353Z] ......                                                                   [ 93%]
[2023-04-19T18:05:03.448Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2023-04-19T18:08:38.927Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2023-04-19T18:08:38.927Z] 
[2023-04-19T18:08:38.927Z] =================================== FAILURES ===================================

tlvu · 2023-04-19T20:35:02Z

canarie-api: failed retrieving version [0.5_dev] release time from [github: bird-house/hummingbird]                                                                                                          
Traceback (most recent call last):                                                                                                                                                                           
  File "/config/docker_configuration.py", line 83, in get_release_time_from_repo_tag                                                                                                                         
    release = _get_release_time_from_github_tag(repository_reference, tagged_version)                                                                                                                        
  File "/config/docker_configuration.py", line 54, in _get_release_time_from_github_tag                                                                                                                      
    raise ValueError(f"No matching version in tagged releases under [{url}].")                                                                                                                               
ValueError: No matching version in tagged releases under [https://api.github.com/repos/bird-house/hummingbird/tags].

tlvu · 2023-04-19T20:57:29Z

https://lvupavicsmaster.ouranos.ca/canarie/node/service/status, the lastStatusUpdate do not change. The /stats page is fine.

fmigneault · 2023-04-19T22:43:57Z

@tlvu
f4da986 resolves the hummingbird tag

Not sure about the lastStatusUpdate though. Any errors in logs regarding a failing operation?

fmigneault · 2023-04-19T22:53:12Z

run tests

tlvu · 2023-04-19T22:57:04Z

Not sure about the lastStatusUpdate though. Any errors in logs regarding a failing operation?

Nothing in the logs, I think bug in the DB update somewhere, not in the monitoring config in this birdhouse-deploy repo.

crim-jenkins-bot · 2023-04-20T00:17:50Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1498/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-216.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1087/

NOTEBOOK TEST RESULTS

    
[2023-04-19T23:09:31.073Z] ============================= test session starts ==============================
[2023-04-19T23:09:31.073Z] platform linux -- Python 3.8.16, pytest-7.2.0, pluggy-1.0.0
[2023-04-19T23:09:31.073Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-04-19T23:09:31.073Z] plugins: anyio-3.6.2, dash-2.7.0, nbval-0.9.6, tornasync-0.6.0.post2
[2023-04-19T23:09:31.073Z] collected 268 items
[2023-04-19T23:09:31.073Z] 
[2023-04-19T23:09:40.957Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2023-04-19T23:09:52.802Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  6%]
[2023-04-19T23:10:01.966Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  8%]
[2023-04-19T23:10:11.898Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 11%]
[2023-04-19T23:10:16.568Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 15%]
[2023-04-19T23:23:02.442Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 20%]
[2023-04-19T23:23:02.443Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 20%]
[2023-04-19T23:23:07.845Z] ...............                                                          [ 26%]
[2023-04-19T23:23:18.868Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 27%]
[2023-04-19T23:23:27.568Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 30%]
[2023-04-19T23:23:49.616Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 32%]
[2023-04-19T23:23:51.267Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 32%]
[2023-04-19T23:23:56.723Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 35%]
[2023-04-19T23:24:03.223Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 37%]
[2023-04-19T23:28:21.447Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 42%]
[2023-04-19T23:29:39.013Z] .............                                                            [ 47%]
[2023-04-19T23:29:41.564Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 49%]
[2023-04-19T23:29:44.166Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 52%]
[2023-04-19T23:30:23.425Z] .................                                                        [ 58%]
[2023-04-19T23:30:30.195Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 60%]
[2023-04-19T23:30:32.106Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 60%]
[2023-04-19T23:30:33.155Z] .FFFFFFFF                                                                [ 64%]
[2023-04-19T23:30:46.329Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 68%]
[2023-04-19T23:30:56.813Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 70%]
[2023-04-19T23:31:46.619Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 79%]
[2023-04-19T23:31:49.167Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 79%]
[2023-04-19T23:32:06.646Z] ......                                                                   [ 81%]
[2023-04-19T23:37:43.337Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 82%]
[2023-04-19T23:39:40.614Z] .............                                                            [ 86%]
[2023-04-19T23:40:02.598Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 87%]
[2023-04-19T23:48:02.690Z] ....s.                                                                   [ 89%]
[2023-04-19T23:48:10.817Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-04-19T23:48:17.199Z] ...                                                                      [ 91%]
[2023-04-19T23:48:32.100Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 91%]
[2023-04-19T23:48:59.386Z] ......                                                                   [ 93%]
[2023-04-19T23:49:01.427Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2023-04-19T23:51:32.004Z] notebooks/stress-tests.ipynb ...F.                                       [100%]
[2023-04-19T23:51:32.004Z] 
[2023-04-19T23:51:32.004Z] =================================== FAILURES ===================================

tlvu · 2023-04-20T02:51:58Z

canarie-api: failed retrieving version [0.5_dev] release time from [github: bird-house/hummingbird]                                                                                                          
Traceback (most recent call last):                                                                                                                                                                           
  File "/config/docker_configuration.py", line 83, in get_release_time_from_repo_tag                                                                                                                         
    release = _get_release_time_from_github_tag(repository_reference, tagged_version)                                                                                                                        
  File "/config/docker_configuration.py", line 54, in _get_release_time_from_github_tag                                                                                                                      
    raise ValueError(f"No matching version in tagged releases under [{url}].")                                                                                                                               
ValueError: No matching version in tagged releases under [https://api.github.com/repos/bird-house/hummingbird/tags].

Confirm fixed

canarie-api: found version [0.5_dev] release time [2020-01-21T20:20:21.953117Z] from [docker: pavics/hummingbird]

crim-jenkins-bot · 2023-04-20T17:17:11Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1507/
Result : success

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-36.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1093/

NOTEBOOK TEST RESULTS

    
[2023-04-20T16:33:32.606Z] ============================= test session starts ==============================
[2023-04-20T16:33:32.606Z] platform linux -- Python 3.8.16, pytest-7.2.0, pluggy-1.0.0
[2023-04-20T16:33:32.606Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-04-20T16:33:32.606Z] plugins: anyio-3.6.2, dash-2.7.0, nbval-0.9.6, tornasync-0.6.0.post2
[2023-04-20T16:33:32.606Z] collected 268 items
[2023-04-20T16:33:32.606Z] 
[2023-04-20T16:33:41.305Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2023-04-20T16:33:52.646Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  6%]
[2023-04-20T16:34:01.424Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  8%]
[2023-04-20T16:34:10.132Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 11%]
[2023-04-20T16:34:12.456Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 15%]
[2023-04-20T16:41:45.049Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 20%]
[2023-04-20T16:41:47.606Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 20%]
[2023-04-20T16:41:54.231Z] ...............                                                          [ 26%]
[2023-04-20T16:42:04.701Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 27%]
[2023-04-20T16:42:12.622Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 30%]
[2023-04-20T16:42:28.985Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 32%]
[2023-04-20T16:42:30.373Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 32%]
[2023-04-20T16:42:35.307Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 35%]
[2023-04-20T16:42:41.182Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 37%]
[2023-04-20T16:46:12.872Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 42%]
[2023-04-20T16:47:25.794Z] .............                                                            [ 47%]
[2023-04-20T16:47:29.431Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 49%]
[2023-04-20T16:47:32.027Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 52%]
[2023-04-20T16:47:55.217Z] .................                                                        [ 58%]
[2023-04-20T16:48:01.785Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 60%]
[2023-04-20T16:48:03.168Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 60%]
[2023-04-20T16:48:19.787Z] .........                                                                [ 64%]
[2023-04-20T16:48:29.854Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 68%]
[2023-04-20T16:48:39.839Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 70%]
[2023-04-20T16:49:10.410Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 79%]
[2023-04-20T16:49:11.796Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 79%]
[2023-04-20T16:49:15.622Z] ......                                                                   [ 81%]
[2023-04-20T16:49:42.210Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 82%]
[2023-04-20T16:50:04.050Z] .............                                                            [ 86%]
[2023-04-20T16:50:14.055Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 87%]
[2023-04-20T16:51:18.785Z] ....s.                                                                   [ 89%]
[2023-04-20T16:51:26.921Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-04-20T16:51:32.404Z] ...                                                                      [ 91%]
[2023-04-20T16:51:47.330Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 91%]
[2023-04-20T16:52:13.492Z] ......                                                                   [ 93%]
[2023-04-20T16:52:15.114Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2023-04-20T16:55:49.277Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2023-04-20T16:55:49.277Z] 
[2023-04-20T16:55:49.277Z] ================= 265 passed, 3 skipped in 1332.06s (0:22:12) ==================

tlvu

Good enough for now. Please open an issue to not forget to address the issue about performing an install in the entrypoint of canarie-api which defeat the reproducibility feature of a docker image.

tlvu · 2023-04-20T18:18:38Z

Forget to say, this one needs a minor bump instead of a patch bump because of all the image format change.

crim-jenkins-bot · 2023-04-20T21:45:26Z

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/1508/
Result : success

BIRDHOUSE_DEPLOY_BRANCH : fix-canarieapi
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-36.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1094/

NOTEBOOK TEST RESULTS

    
[2023-04-20T20:59:11.628Z] ============================= test session starts ==============================
[2023-04-20T20:59:11.628Z] platform linux -- Python 3.8.16, pytest-7.2.0, pluggy-1.0.0
[2023-04-20T20:59:11.628Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-04-20T20:59:11.628Z] plugins: anyio-3.6.2, dash-2.7.0, nbval-0.9.6, tornasync-0.6.0.post2
[2023-04-20T20:59:11.628Z] collected 268 items
[2023-04-20T20:59:11.628Z] 
[2023-04-20T20:59:20.794Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2023-04-20T20:59:29.093Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  6%]
[2023-04-20T20:59:36.446Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  8%]
[2023-04-20T20:59:45.469Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 11%]
[2023-04-20T20:59:48.331Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 15%]
[2023-04-20T21:07:33.486Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 20%]
[2023-04-20T21:07:36.039Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 20%]
[2023-04-20T21:07:58.446Z] ...............                                                          [ 26%]
[2023-04-20T21:08:13.236Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 27%]
[2023-04-20T21:08:21.153Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 30%]
[2023-04-20T21:08:37.244Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 32%]
[2023-04-20T21:08:38.631Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 32%]
[2023-04-20T21:08:44.027Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 35%]
[2023-04-20T21:08:51.284Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 37%]
[2023-04-20T21:12:18.812Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 42%]
[2023-04-20T21:13:26.011Z] .............                                                            [ 47%]
[2023-04-20T21:13:30.471Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 49%]
[2023-04-20T21:13:32.806Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 52%]
[2023-04-20T21:13:56.214Z] .................                                                        [ 58%]
[2023-04-20T21:14:02.225Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 60%]
[2023-04-20T21:14:03.613Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 60%]
[2023-04-20T21:14:13.549Z] .........                                                                [ 64%]
[2023-04-20T21:14:26.340Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 68%]
[2023-04-20T21:14:36.613Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 70%]
[2023-04-20T21:15:08.716Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 79%]
[2023-04-20T21:15:10.635Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 79%]
[2023-04-20T21:15:14.787Z] ......                                                                   [ 81%]
[2023-04-20T21:16:11.075Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 82%]
[2023-04-20T21:16:34.612Z] .............                                                            [ 86%]
[2023-04-20T21:16:46.863Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 87%]
[2023-04-20T21:17:54.618Z] ....s.                                                                   [ 89%]
[2023-04-20T21:18:01.219Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-04-20T21:18:07.056Z] ...                                                                      [ 91%]
[2023-04-20T21:18:21.966Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 91%]
[2023-04-20T21:18:45.694Z] ......                                                                   [ 93%]
[2023-04-20T21:18:48.973Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2023-04-20T21:22:38.238Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2023-04-20T21:22:38.238Z] 
[2023-04-20T21:22:38.238Z] ================= 265 passed, 3 skipped in 1398.64s (0:23:18) ==================

fmigneault added 2 commits January 31, 2023 18:47

fix CanarieAPI config to support Python 3.x

7b836f8

update changes

340106c

fmigneault requested review from tlvu and matprov February 1, 2023 00:03

fmigneault self-assigned this Feb 1, 2023

tlvu requested changes Feb 1, 2023

View reviewed changes

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adjust exec_file to consider keyword arguments and Python 2/3 simulta…

50706db

…neous support

update changelog about canarieapi Python 3 configs requirement

8e27f7f

add metadata for all services represented under canarie api

a12d028

fixes to canarieapi configs

76743a4

Merge branch 'master' into fix-canarieapi

ed2a987

bird-house deleted a comment from crim-jenkins-bot Apr 19, 2023

Merge branch 'master' into fix-canarieapi

a28bafe

bird-house deleted a comment from crim-jenkins-bot Apr 19, 2023

update hummingbird canarieapi config reference for actual tag location

f4da986

bird-house deleted a comment from crim-jenkins-bot Apr 19, 2023

This was referenced Apr 19, 2023

Fix flaky WPS provider responses (i.e.: other WPS birds) causing failure during their registration in weaver #321

Merged

fix flaky WPS provider responses causing failure during their registration in weaver #318

Closed

fmigneault added 2 commits April 20, 2023 12:11

Merge remote-tracking branch 'origin/master' into fix-canarieapi

ede869c

revert all-public-access dependency under canarie-api-full-monitoring

e32baa7

fmigneault requested a review from tlvu April 20, 2023 17:28

tlvu approved these changes Apr 20, 2023

View reviewed changes

Bump version: 1.25.7 → 1.26.0

5bbf294

github-actions bot added ci/operations Continuous Integration components documentation Improvements or additions to documentation labels Apr 20, 2023

fmigneault merged commit cf54b20 into master Apr 20, 2023

fmigneault deleted the fix-canarieapi branch April 20, 2023 20:46

This was referenced Apr 20, 2023

[BUG] Monitoring and access logs values not updating Ouranosinc/CanarieAPI#21

Open

💡 [Feature] Avoid runtime installation of CanarieAPI dependencies #322

Open

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fix CanarieAPI config to support Python 3.x #284

fix CanarieAPI config to support Python 3.x #284

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fix CanarieAPI config to support Python 3.x #284

fix CanarieAPI config to support Python 3.x #284

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DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

crim-jenkins-bot commented Feb 3, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

crim-jenkins-bot commented Feb 3, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

fmigneault commented Feb 3, 2023 • edited Loading

crim-jenkins-bot commented Feb 3, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

crim-jenkins-bot commented Feb 7, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

crim-jenkins-bot commented Apr 19, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

tlvu commented Apr 19, 2023

tlvu commented Apr 19, 2023

fmigneault commented Apr 19, 2023

fmigneault commented Apr 19, 2023

tlvu commented Apr 19, 2023

crim-jenkins-bot commented Apr 20, 2023

E2E Test Results

DACCS-iac Pipeline Results

PAVICS-e2e-workflow-tests Pipeline Results

fmigneault commented Feb 1, 2023 •

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fmigneault commented Feb 3, 2023 •

edited

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