Omics Workflows

Name	Version	Category	Status
qualimap	2.2.2a	QC
fastq-screen	0.15.2	QC
fastqc	0.11.5	QC
fastp	0.23.2	QC
ngscheckmate	1.0.0	QC
sentieon-genomics	202112.04	PGX-DNA-SNV
strelka	2.9.10	PGX-DNA-SNV
pindel	0.2.5b9	PGx-DNA-Indel
fastp	0.23.2	RNA-EXP
hisat2	2.2.1	RNA-EXP
samtools	1.14	RNA-EXP
stringtie	1.3.4	RNA-EXP
ballgown		RNA-EXP
star	2.7.10a	RNA-Fusion
star-fusion	1.6.0	RNA-Fusion
arriba	2.3.0	RNA-Fusion
starseqr	0.6.7	RNA-Fusion
mixcr	2.1.3	RNA-TCR
bwa	0.7.17	GATK-DNA-SNV
gatk	4.0.5.1	GATK-DNA-SNV
hap.py	0.3.14	GATK-DNA-SNV
picard	2.18.7	GATK-DNA-SNV
cnvkit	0.96	DNA-CNV
ascat	2.5.2	DNA-CNV
cnv_facets	0.16.0	DNA-CNV
r-sequenza	2.1.2	DNA-CNV
delly	1.0.3	DNA-SV
manta	1.6.0	DNA-SV
gridss	2.13.2	DNA-SV
svaba	1.1.0	DNA-SV
hla-polysolver	1.0.0	HLA-Typing DNA
minimap2	2.24	ecDNA