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Differential Expression Widget generates a blank output and error message #334

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IaelWM opened this issue Jul 4, 2023 · 4 comments · Fixed by #346
Closed

Differential Expression Widget generates a blank output and error message #334

IaelWM opened this issue Jul 4, 2023 · 4 comments · Fixed by #346
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@IaelWM
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IaelWM commented Jul 4, 2023

Describe the bug
A clear and concise description of what the bug is.
I'm trying to analyse a gene set and find which are differentially expressed between two sample sets, using the differential expression widget from the bioinformatics add-on v 4.7.1. The analysis works fine however when I try to click the "commit" button a window pops up with the message below and the data table widget with the output is blank
'''Error encountered in widget Differential Expression:

Traceback (most recent call last):
File: "D:\OrangeStat\lib\site-packages\orangewidget\gui.py", line 2009, in do_commit
commit ( )
File " D:\OrangeStat\lib\site-
packages\orangecontrib\bioinformatics\widgets\OWDifferentialExperission.py" line 1334, in commit
gene_ids = self.data.attributes [GENE_ID_ATTRIBUTES]
KeyError: 'gene_id_attribute'
'''

Expected behavior
I expected a data table with the selected genes

Screenshots
Captura de tela 2023-07-04 131424
Captura de tela 2023-07-04 131514
Captura de tela 2023-07-04 131545
Captura de tela 2023-07-04 131818

Desktop (please complete the following information):

  • OS: Windows 11
  • Orange Version 3.35
  • Add-on Version 4.7.1
@IaelWM IaelWM added the bug label Jul 4, 2023
@JakaKokosar
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Thank you for reporting. I will look into it.

@frankyates06
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I did not find the solution to this bug: could you please tell me where to find it?
best (and I apologize, I am a newbie)

@JakaKokosar
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@frankyates06 I'm working on it ATM. Will keep you posted.

@JakaKokosar
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@frankyates06 and @IaelWM try updating the add-on on 4.8.1.

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3 participants