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Differential Expression output error #6494

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IaelWM opened this issue Jul 4, 2023 · 1 comment
Closed

Differential Expression output error #6494

IaelWM opened this issue Jul 4, 2023 · 1 comment
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bug report Bug is reported by user, not yet confirmed by the core team

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@IaelWM
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IaelWM commented Jul 4, 2023

What's wrong?

I'm trying to analyse a gene set and find which are differentially expressed between two sample sets, using the differential expression widget from the bioinformatics add-on v 4.7.1. The analysis works fine however when I try to click the "commit" button a window pops up with the message below and the data table widget with the output is black
'''Error encountered in widget Differential Expression:

Traceback (most recent call last):
File: "D:\OrangeStat\lib\site-packages\orangewidget\gui.py", line 2009, in do_commit
commit ( )
File " D:\OrangeStat\lib\site-
packages\orangecontrib\bioinformatics\widgets\OWDifferentialExperission.py" line 1334, in commit
gene_ids = self.data.attributes [GENE_ID_ATTRIBUTES]
KeyError: 'gene_id_attribute'
'''

Captura de tela 2023-07-04 131424 image image Captura de tela 2023-07-04 131424 image

What's your environment?

  • Operating system: Windows 11
  • Orange version: 3.35
  • How you installed Orange: From the website
@IaelWM IaelWM added the bug report Bug is reported by user, not yet confirmed by the core team label Jul 4, 2023
@JakaKokosar
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I am closing this issue, since it has already been opened here: biolab/orange3-bioinformatics#334

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