Nexus 1.1.1

Nexus provides a pan-genome compacted de Bruijn graph data structure using the bidirectional FM-index, with support for lossless approximate pattern matching using search schemes and subgraph visualization.

Updates with respect to Nexus v1.1.0:

• Nexus now supports creating the index starting from .fasta/.fa/.fna files instead of a preprocessed .txt file
• More efficient implementation for finding the strain corresponding to an occurrence

Nexus 1.1.0

Nexus provides a pan-genome compacted de Bruijn graph data structure using the Bidirectional FM-index, with support for lossless approximate pattern matching using search schemes and subgraph visualization.

With respect to Nexus 1.0.0, this release implements a more optimized version of Nexus, with a lower memory footprint.

Important: To use Nexus v1.1.0 instead of v1.0.0, the index must be rebuilt.

Nexus 1.0.0

First release of Nexus, implementing pan-genome compacted de Bruijn graphs with support for approximate pattern matching using search schemes.