megahit: add linux-aarch64 build

[martin-g]

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[martin-g]

depends on

• Add support for non-x86_64 architectures (e.g. Linux ARM64) voutcn/megahit#368

[martin-g]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Azure

Package(s) built on Azure are ready for inspection:

Arch	Package	Zip File
linux-64	megahit-1.2.9-h43eeafb_5.tar.bz2	LinuxArtifacts

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You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c ./packages <package name>

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Docker image(s) built (images for Azure are in the LinuxArtifacts zip file above):

Package	Tag	Install with docker
megahit	1.2.9--h43eeafb_5	show gzip -dc LinuxArtifacts/images/megahit:1.2.9--h43eeafb_5.tar.gz | docker load

CircleCI

Package(s) built on CircleCI are ready for inspection:

Arch	Package	Repodata
linux-aarch64	megahit-1.2.9-hf1d9491_5.tar.bz2	repodata.json

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You may also use conda to install these:

conda install -c https://output.circle-artifacts.com/output/job/695ebd31-1274-4662-b227-8f71a7e26e44/artifacts/0/tmp/artifacts/packages <package name>

[martin-g]

mgrigorov in 🌐 euler-arm-22 in /tmp/megahit took 10s 
❯ tar jxvf megahit-1.2.9-hf1d9491_5.tar.bz2 
info/run_exports.json
info/test/run_test.sh
info/recipe/build.sh
info/hash_input.json
info/index.json
info/files
info/recipe/meta.yaml.template
info/recipe/linux-aarch64-support-pr-368.patch
info/recipe/meta.yaml
info/paths.json
info/recipe/conda_build_config.yaml
info/about.json
info/licenses/LICENSE
info/git
bin/megahit_toolkit
bin/megahit
bin/megahit_core
bin/megahit_core_no_hw_accel
bin/megahit_core_popcnt
share/megahit/test_data/generate_random_fasta.py
share/megahit/test_data/r1.il.fa.gz
share/megahit/test_data/r4.fa
share/megahit/test_data/loop.fa
share/megahit/test_data/ref.fa
share/megahit/test_data/r3_1.fa
share/megahit/test_data/r3_2.fa
share/megahit/test_data/empty.fa
share/megahit/test_data/r2.il.fa.bz2

mgrigorov in 🌐 euler-arm-22 in /tmp/megahit 
❯ file bin/*
bin/megahit:                  Python script, ASCII text executable
bin/megahit_core:             ELF 64-bit LSB pie executable, ARM aarch64, version 1 (GNU/Linux), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
bin/megahit_core_no_hw_accel: ELF 64-bit LSB pie executable, ARM aarch64, version 1 (GNU/Linux), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
bin/megahit_core_popcnt:      ELF 64-bit LSB pie executable, ARM aarch64, version 1 (GNU/Linux), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, with debug_info, not stripped
bin/megahit_toolkit:          symbolic link to megahit_core_no_hw_accel

mgrigorov in 🌐 euler-arm-22 in /tmp/megahit 
❯ ./bin/megahit_core
Usage: ./bin/megahit_core <sub_program> [sub options]
    sub-programs:
       assemble       assemble from SdBG
       local          local asssembly
       iterate        extract iterative edges
       buildlib       build read library
       count          kmer counting
       read2sdbg      build sdbg from reads
       seq2sdbg       build sdbg from megahit contigs + edges
       contig2fastg   convert MEGAHIT's k*.contigs.fa to fastg format
       readstat       calculate read stats (# of reads, bases, longest, shortest, average)
       filterbylen    filter contigs by length
       checkcpu       check whether the run-time CPU supports POPCNT and BMI2
       checkpopcnt    check whether the run-time CPU supports POPCNT
       checkbmi2      check whether the run-time CPU supports BMI2
       dumpversion    dump version
       kmax           the largest k value supported

LGTM!

[martin-g]

@BiocondaBot please add label

[mencian]

Thanks @martin-g!