Merge pull request #1 from biobricks-ai/nix

Add initial Nix flake setup

Dockerfile

@@ -0,0 +1,18 @@
+FROM nixos/nix
+
+# Enable flakes
+RUN mkdir -p ~/.config/nix && \
+    echo "experimental-features = nix-command flakes" >> ~/.config/nix/nix.conf
+
+# Create and set working directory
+WORKDIR /app
+
+# Copy your flake files
+COPY flake.nix flake.lock ./
+
+# Build the development environment
+RUN nix develop --command echo "Development environment ready"
+
+# Default command to drop into the dev shell
+ENTRYPOINT ["nix", "develop"]
+CMD ["/bin/bash"]

flake.nix

@@ -0,0 +1,35 @@
+{
+  description = "pubchem-annotations-kg";
+
+  inputs = {
+    nixpkgs.url = "github:nixos/nixpkgs/nixos-23.05";
+    flake-utils.url = "github:numtide/flake-utils";
+    hdt-cpp = {
+      url = "github:insilica/nix-hdt";
+      inputs.flake-utils.follows = "flake-utils";
+      inputs.nixpkgs.follows = "nixpkgs";
+    };
+    hdt-java = {
+      url = "github:insilica/nix-hdt-java";
+      inputs.flake-utils.follows = "flake-utils";
+      inputs.nixpkgs.follows = "nixpkgs";
+    };
+  };
+
+  outputs = { self, nixpkgs, flake-utils, hdt-cpp, hdt-java }:
+    flake-utils.lib.eachDefaultSystem (system:
+      with import nixpkgs { inherit system; }; {
+	devShells.default = mkShell {
+	  buildInputs = [
+            hdt-cpp.packages.${system}.default
+	    hdt-java.packages.${system}.default
+	    apache-jena
+	    apache-jena-fuseki
+	    jq
+	  ];
+	  env = {
+	    JENA_HOME = "${apache-jena}";
+	  };
+	};
+      });
+}