🐛 Issue #37

bio-ontology-research-group · Nov 19, 2024 · dcfb64c · dcfb64c
1 parent 873df34
commit dcfb64c
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Showing 4 changed files with 11 additions and 8 deletions.
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -22,8 +22,8 @@
 copyright = '2023, Bio-Ontology Research Group'
 author = 'BORG'
 
-release = '1.0.1'
-version = '1.0.1'
+release = '1.0.2-dev'
+version = '1.0.2-dev'
 # -- General configuration
 
 extensions = [

diff --git a/docs/source/index.rst b/docs/source/index.rst
@@ -27,7 +27,7 @@ Getting started
 **mOWL** can be installed from `source code <https://github.com/bio-ontology-research-group/mowl>`_ or from `PyPi <https://pypi.org/project/mowl-borg/>`_. For more details on installation check out the how to :doc:`install/index` section of the project.
 
 .. note::
-   This version of documentation corresponds to mOWL-1.0.1.
+   This version of documentation corresponds to mOWL-1.0.2-dev.
 
 
 mOWL, JPype and the JVM

diff --git a/mowl/projection/edge.py b/mowl/projection/edge.py
@@ -69,14 +69,15 @@ def getEntitiesAndRelations(edges):
         return Edge.get_entities_and_relations(edges)
 
     @staticmethod
+    @versionchanged(version="1.0.2", reason="Method return type changed to tuple of lists")
     def get_entities_and_relations(edges):
         '''
         :param edges: list of edges
         :type edges: :class:`Edge`
 
         :returns: Returns a 2-tuple containing the list of entities (heads and tails) and the \
             list of relations
-        :rtype: (Set of str, Set of str)
+        :rtype: (list of str, list of str)
         '''
 
         entities = set()
@@ -86,6 +87,9 @@ def get_entities_and_relations(edges):
             entities |= {edge.src, edge.dst}
             relations |= {edge.rel}
 
+        entities = sorted(list(entities))
+        relations = sorted(list(relations))
+
         return (entities, relations)
 
     @staticmethod
@@ -109,12 +113,11 @@ def as_pykeen(edges, create_inverse_triples=True, entity_to_id=None, relation_to
         """
         if entity_to_id is None or relation_to_id is None:
             classes, relations = Edge.getEntitiesAndRelations(edges)
-            classes, relations = set(classes), set(relations)
 
         if entity_to_id is None:
-            entity_to_id = {v: k for k, v in enumerate(list(classes))}
+            entity_to_id = {v: k for k, v in enumerate(classes)}
         if relation_to_id is None:
-            relation_to_id = {v: k for k, v in enumerate(list(relations))}
+            relation_to_id = {v: k for k, v in enumerate(relations)}
 
         def map_edge(edge):
             return [entity_to_id[edge.src], relation_to_id[edge.rel], entity_to_id[edge.dst]]

diff --git a/setup.py b/setup.py
@@ -6,7 +6,7 @@
 
 setuptools.setup(
     name="mowl-borg",
-    version="1.0.2-dev.1",
+    version="1.0.2-dev.2",
     author="Bio-Ontology Research Group",
     author_email="[email protected]",
     description="mOWL: A machine learning library with ontologies",