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Update samtools container image to 1.20--h50ea8bc_0 #367

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Apr 19, 2024
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Update samtools container image to 1.20--h50ea8bc_0 #367

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4 changes: 2 additions & 2 deletions core/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -36,8 +36,8 @@ class SamtoolsMpileupArgs extends Args4jBase {
@Args4jOption(required = false, name = "-executable", usage = "Path to the samtools executable. Defaults to samtools.")
var executable: String = "samtools"

@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.19--h50ea8bc_0.")
var image: String = "quay.io/biocontainers/samtools:1.19--h50ea8bc_0"
@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/samtools:1.20--h50ea8bc_0.")
var image: String = "quay.io/biocontainers/samtools:1.20--h50ea8bc_0"

@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
var sudo: Boolean = false
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