Fix column order validation #318
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Continuous integration Unit tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| PythonBlack: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Set up the specific Python version for Black | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.12 # Set your desired Python version here | |
| # Install Black and dependencies if necessary | |
| - name: Install Black | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install black | |
| # Run Black linting | |
| - name: Check code lints with Black | |
| run: black . --check | |
| # If the above check failed, post a comment on the PR explaining the failure | |
| - name: Post PR comment | |
| if: failure() | |
| uses: mshick/add-pr-comment@v1 | |
| with: | |
| message: | | |
| ## Python linting (`black`) is failing | |
| To keep the code consistent with lots of contributors, we run automated code consistency checks. | |
| To fix this CI test, please run: | |
| * Install [`black`](https://black.readthedocs.io/en/stable/): `pip install black` | |
| * Fix formatting errors in your pipeline: `black .` | |
| Once you push these changes the test should pass, and you can hide this comment :+1: | |
| We highly recommend setting up Black in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help! | |
| Thanks again for your contribution! | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| allow-repeats: false | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source-code repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: python-isort | |
| uses: isort/[email protected] | |
| with: | |
| isortVersion: "latest" | |
| requirementsFiles: "requirements.txt requirements-dev.txt" | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt -r requirements-dev.txt | |
| - name: Install package | |
| run: python setup.py install | |
| - name: Test OpenMS converter | |
| run: | | |
| python -m pytest tests |