fixed typo

bigbio · May 7, 2024 · bae2e3e · bae2e3e
1 parent c41f628
commit bae2e3e
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/conf/test_full_lfq.config b/conf/test_full_lfq.config
@@ -29,5 +29,5 @@ params {
     add_decoys = true
     add_triqler_output = true
     protein_level_fdr_cutoff = 0.01
-    psm_pep_fdr_cutoff = 0.01
+    psm_level_fdr_cutoff = 0.01
 }
diff --git a/conf/test_full_tmt.config b/conf/test_full_tmt.config
@@ -27,7 +27,7 @@ params {
     posterior_probabilities = "percolator"
     search_engines = "comet,msgf"
     protein_level_fdr_cutoff = 0.01
-    psm_pep_fdr_cutoff = 0.01
+    psm_level_fdr_cutoff = 0.01
     add_decoys = true
     protocol = 'TMT'
 }
diff --git a/conf/test_localize.config b/conf/test_localize.config
@@ -30,4 +30,5 @@ params {
     psm_level_fdr_cutoff = 0.50
     skip_post_msstats = true
     quantify_decoys = true
+    fdr_level = "psm_level_fdrs"
 }
diff --git a/workflows/quantms.nf b/workflows/quantms.nf
@@ -109,7 +109,7 @@ workflow QUANTMS {
         if (params.id_only == false) {
             log.warn "The mokapot rescoring engine currently only is supported in id_only subworkflow via ms2rescore."
         }
-        if (params.posterior_probabilities == "mokapot" && params.FDR_level == "peptide-level-fdrs") {
+        if (params.posterior_probabilities == "mokapot" && params.fdr_level == "peptide_level_fdrs") {
                 log.warn "The rescoring engine is set to mokapot. This rescoring engine currently only supports psm-level-fdr via ms2rescore."
         }
         DDA_ID( FILE_PREPARATION.out.results, ch_searchengine_in_db, FILE_PREPARATION.out.spectrum_data, CREATE_INPUT_CHANNEL.out.ch_expdesign)