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bgruening · Oct 20, 2023 · 7ffb7fe · 7ffb7fe
1 parent bb0ffef
commit 7ffb7fe
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/tools/hifiasm/hifiasm.xml b/tools/hifiasm/hifiasm.xml
@@ -454,12 +454,12 @@
             <param name="filter_bits" value="0"/>
             <conditional name="mode">
                 <param name="mode_selector" value="trio"/>
-        <conditional name="trioinput">
-            <param name="reads" value="child.fasta.gz"/>
-            <param name="trio_input_selector" value="reads"/>
-            <param name="hap1_reads" value="paternal.fasta.gz"/>
-            <param name="hap2_reads" value="maternal.fasta.gz"/>
-        </conditional>
+                <conditional name="trioinput">
+                    <param name="reads" value="child.fasta.gz"/>
+                    <param name="trio_input_selector" value="reads"/>
+                    <param name="hap1_reads" value="paternal.fasta.gz"/>
+                    <param name="hap2_reads" value="maternal.fasta.gz"/>
+                </conditional>
                 <param name="max_kmers" value="2"/>
                 <param name="min_kmers" value="5"/>
             </conditional>
@@ -588,6 +588,7 @@
         <!-- TEST 15: Test trio LIST mode -->
         <test expect_num_outputs="6">
             <param name="filter_bits" value="0"/>
+            <param name="log_out" value="yes"/>
             <conditional name="mode">
                 <param name="mode_selector" value="trio"/>
                 <conditional name="trioinput">
@@ -599,7 +600,6 @@
                 <param name="max_kmers" value="2"/>
                 <param name="min_kmers" value="5"/>
             </conditional>
-            <param name="log_out" value="yes"/>
             <output name="log_file" ftype="txt">
                 <assert_contents>
                     <has_text text="flagged 100 reads, out of 100 lines in file"/>