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update biocontrol plants, agents, and combinations
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@brennanwebster
brennanwebster committed Nov 5, 2024
1 parent e09ee65 commit e5e752a
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212 changes: 212 additions & 0 deletions database/src/migrations/0029_biocontrol_code_updates.ts
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import { Knex } from 'knex';

export async function up(knex: Knex) {
await knex.raw(
//language=PostgreSQL
`
-- insert agent into bio agent codes
INSERT INTO invasivesbc.code
(code_header_id,
code_name,
code_description,
created_by_user_id,
updated_by_user_id)
SELECT code_header_id,
code_name,
code_description,
created_by_user_id,
updated_by_user_id
FROM (VALUES (43,
'CHEIGRO',
'CHEIGRO [Cheilosia grossa]',
1,
1)) AS new_codes (code_header_id, code_name, code_description,
created_by_user_id, updated_by_user_id)
WHERE NOT EXISTS (SELECT 1
FROM invasivesbc.code existing_codes
WHERE existing_codes.code_description =
new_codes.code_description);
-- update agent code sort order
WITH ordered_alphabetically
AS (SELECT code_id,
Row_number()
OVER (
ORDER BY code_description) AS new_sort_order
FROM invasivesbc.code
WHERE code_header_id = 43)
UPDATE invasivesbc.code
SET code_sort_order = ordered_alphabetically.new_sort_order
FROM ordered_alphabetically
WHERE invasivesbc.code.code_id = ordered_alphabetically.code_id;
-- insert plants into ip with biocontrol codes
INSERT INTO invasivesbc.code
(code_header_id,
code_name,
code_description,
created_by_user_id,
updated_by_user_id)
SELECT code_header_id,
code_name,
code_description,
created_by_user_id,
updated_by_user_id
FROM (VALUES (78,
'RC',
'European common reed (PHRA AUS Phragmites australis subsp. australis)',
1,
1),
(78,
'GK',
'Giant knotweed (FALL SAC Reynoutria / Fallopia sachalinensis)',
1,
1),
(78,
'QH',
'Queendevil hawkweed (HIER PRA Pilosella praealta / Hieracium praealtum)'
,
1,
1),
(78,
'TH',
'Tall hawkweed (HIER PIL Pilosella / Hieracium piloselloides)',
1,
1)) AS new_codes (code_header_id, code_name, code_description,
created_by_user_id, updated_by_user_id)
WHERE NOT EXISTS (SELECT 1
FROM invasivesbc.code existing_codes
WHERE existing_codes.code_description =
new_codes.code_description);
-- update code sort order
WITH ordered_alphabetically
AS (SELECT code_id,
Row_number()
OVER (
ORDER BY code_description) AS new_sort_order
FROM invasivesbc.code
WHERE code_header_id = 78)
UPDATE invasivesbc.code
SET code_sort_order = ordered_alphabetically.new_sort_order
FROM ordered_alphabetically
WHERE invasivesbc.code.code_id = ordered_alphabetically.code_id;
-- update agent description typos
UPDATE invasivesbc.code
SET code_description = CASE
WHEN code_name = 'CYSTSON' THEN
'CYSTSON [Cystiphora sonchi]'
WHEN code_name = 'MOGUCRU' THEN
'MOGUCRU [Mogulones crucifer]'
WHEN code_name = 'SCLESCL' THEN
'SCLESCL [Sclerotinia sclerotiorum]'
WHEN code_name = 'TYRIJAC' THEN
'TYRIJAC [Tyria jacobaeae]'
WHEN code_name = 'UROPSOL' THEN
'UROPSOL [Urophora solstitialis]'
WHEN code_name = 'ACERANG' THEN
'ACERANG [Aceria angustifoliae]'
END
WHERE code_header_id = 43
AND code_name IN ( 'CYSTSON', 'MOGUCRU', 'SCLESCL', 'TYRIJAC',
'UROPSOL', 'ACERANG' );
-- insert plant agent combinations
INSERT INTO invasivesbc.plant_agent_treatment
(plant_code_name,
agent_code_name)
VALUES ('BT',
'CHEIGRO'),
('CT',
'CHEIGRO'),
('DK',
'BANGFAU'),
('SK',
'BANGFAU'),
('GK',
'APHAITA'),
('SK',
'TEREVIR');
`
);
}

export async function down(knex: Knex) {
//language=PostgreSQL
await knex.raw(
`
-- delete plant agent combinations
DELETE FROM invasivesbc.plant_agent_treatment
WHERE ( ( plant_code_name = 'BT'
AND agent_code_name = 'CHEIGRO' )
OR ( plant_code_name = 'CT'
AND agent_code_name = 'CHEIGRO' )
OR ( plant_code_name = 'DK'
AND agent_code_name = 'BANGFAU' )
OR ( plant_code_name = 'SK'
AND agent_code_name = 'BANGFAU' )
OR ( plant_code_name = 'GK'
AND agent_code_name = 'APHAITA' )
OR ( plant_code_name = 'SK'
AND agent_code_name = 'TEREVIR' ) );
-- delete agent code
DELETE FROM invasivesbc.code
WHERE code_header_id = 43
AND code_name IN ( 'CHEIGRO' );
-- update agent code sort order
WITH ordered_alphabetically
AS (SELECT code_id,
Row_number()
OVER (
ORDER BY code_description) AS new_sort_order
FROM invasivesbc.code
WHERE code_header_id = 43)
UPDATE invasivesbc.code
SET code_sort_order = ordered_alphabetically.new_sort_order
FROM ordered_alphabetically
WHERE invasivesbc.code.code_id = ordered_alphabetically.code_id;
-- delete ip with bioctronol codes
DELETE FROM invasivesbc.code
WHERE code_header_id = 78
AND code_name IN ( 'RC', 'GK', 'QH', 'TH' );
-- update sort order
WITH ordered_alphabetically
AS (SELECT code_id,
Row_number()
OVER (
ORDER BY code_description) AS new_sort_order
FROM invasivesbc.code
WHERE code_header_id = 78)
UPDATE invasivesbc.code
SET code_sort_order = ordered_alphabetically.new_sort_order
FROM ordered_alphabetically
WHERE invasivesbc.code.code_id = ordered_alphabetically.code_id;
-- update agent code description
UPDATE invasivesbc.code
SET code_description = CASE
WHEN code_name = 'CYSTSON' THEN
'CYSTSON [Cystophora sonchi]'
WHEN code_name = 'MOGUCRU' THEN
'MOGUCRU [Mogulones cruciger]'
WHEN code_name = 'SCLESCL' THEN
'SCLESCL [Sclerotinia sclerotium]'
WHEN code_name = 'TYRIJAC' THEN
'TYRIJAC [Tyria jacobeae]'
WHEN code_name = 'UROPSOL' THEN
'UROPSOL [Urophora solstitialus]'
WHEN code_name = 'ACERANG' THEN
'ACERANG [Aceria angustifolia]'
END
WHERE code_header_id = 43
AND code_name IN ( 'CYSTSON', 'MOGUCRU', 'SCLESCL', 'TYRIJAC',
'UROPSOL', 'ACERANG' );
`
);
}

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