BugFixes: Bug Fixes and Misc Cleanup

[NickPhura]

Links to Jira Tickets

n/a

Description of Changes

Migrate deprecated attachment file_type values (was impacting Test and Prod).

Remove deprecated wldtaxonomic_units_id and field_method_id columns.

Update minimum replicas to stop some of the platform alert spam about horizontal pod autoscalars

Comment out HorizontalPodAutoscaler in API/APP

Update clamav readme and files.

Testing Notes

Basic QA sanity check, no functionality should have changed.

[github-actions]

Openshift URLs for the PR Deployment:

• App Route: https://biohubbc-app-1312-af2668-dev.apps.silver.devops.gov.bc.ca/
• Api Route: https://biohubbc-api-1312-af2668-dev.apps.silver.devops.gov.bc.ca/
• Pods: https://console.apps.silver.devops.gov.bc.ca/k8s/ns/af2668-dev/pods?name=1312

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 75.56%. Comparing base (e4a401e) to head (e9ac376).

Additional details and impacted files

@@             Coverage Diff             @@
##              dev    #1312       +/-   ##
===========================================
+ Coverage   49.21%   75.56%   +26.35%     
===========================================
  Files         639      211      -428     
  Lines       17707     8161     -9546     
  Branches     2787     1124     -1663     
===========================================
- Hits         8714     6167     -2547     
+ Misses       8409     1638     -6771     
+ Partials      584      356      -228     

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[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

[mauberti-bc]

Tested locally and looks good 👍