0.3.5

• Pinned Docker base image versions
• Pinned protobuf in environment.yml
• Fixed GitHub Actions

0.3.4

• ANARCI and tokenization robusteness improvements
• Faster paratope predictions
• Added more numbering and CDR definition combination support

0.3.3

• argument to allow skipping of paratope clustering;
• change input file delimeter symbol;
• fixed issue with when CDR3 sequence is not present/annotated;
• way faster assign_cluster();
• faster clustering by less variable referencing

0.3.2.1: Merge pull request #1 from snejus/fix-copy-instruction-dockerfile

Welcome to 0.3.2.1!

• Building Docker image on Linux host was failing. Fixed now! Thank you @snejus.

CLI and Docker support

Welcome to 0.3.2!

• Interact with PaCPaC using CLI
• PaCPaC is now Dockerized. Run it everywhere!
• fixed issue tokenization did not work when probing.
• python 3.6 will not be supported next year. Moved to 3.7.
• updated dependecy versions.
• More tests and improvements to existing ones.

VH/VL pair paratope clustering and probing support

Paratope cluster and probe VH/VL pairs by providing additional argument for VL column name.

API and performance (numba) improvements

Cleaner API and performance improvements using numba

PaCPaC - Python package to probe and cluster antibody VH sequences by paratopes and clonotypes

Python package built around pandas to probe and cluster sequences by paratopes and/or clonotypes