epas-docker-dev

This is a docker-compose project that provides a postgres database and icd-11 api instance for development purposes. This is specifically used in our Tryton ICD-11 project.

Take a look at https://github.com/alteroo/trytond_health_icd11

Usage

• Make sure you have docker and docker-compose installed.
• Take a look at database.env and icd11.env and edit to set passwords etc.. (it's okay to keep the defaults for development)

Stopping and Starting

Starting

mkdir -p data
docker-compose up -d

monitoring

To see running processes inside the container, use docker-compose top

docker-compose top

You know it is running when elastic search has started, you'll see output like this:

3145   1000   0:56   /usr/bin/java -Xms256m -Xmx1g -Djava.awt.headless=true -XX:+UseParNewGC                
                     -XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=75                          
                     -XX:+UseCMSInitiatingOccupancyOnly -XX:+HeapDumpOnOutOfMemoryError                     
                     -XX:+DisableExplicitGC -Dfile.encoding=UTF-8 -Djna.nosys=true -Xms2g -Xmx2g            
                     -Des.path.home=/usr/share/elasticsearch -cp                                            
                     /usr/share/elasticsearch/lib/elasticsearch-2.4.4.jar:/usr/share/elasticsearch/lib/*    
                     org.elasticsearch.bootstrap.Elasticsearch start  

Stopping

docker-compose down

Test it

To test the API, use this curl command:

curl --location --request GET 'http://localhost:7654/icd/release/11/2019-04/mms/375810888' \
--header 'Accept: application/json' \
--header 'api-version: v2' \
--header 'accept-language: en' \
--header 'releaseId: 2019-04'

The expected output will look something like this:

{"@context":"http://id.who.int/icd/contexts/contextForLinearizationEntity.json","@id":"http://id.who.int/icd/release/11/2019-04/mms/375810888","parent":["http://id.who.int/icd/release/11/2019-04/mms/1215034670"],"child":["http://id.who.int/icd/release/11/2019-04/mms/1773711561","http://id.who.int/icd/release/11/2019-04/mms/375810888/other","http://id.who.int/icd/release/11/2019-04/mms/375810888/unspecified"],"browserUrl":"https://icd.who.int/browse11-2018/l-m/en#/http%3a%2f%2fid.who.int%2ficd%2fentity%2f375810888","code":"MG50.3","source":"http://id.who.int/icd/entity/375810888","classKind":"category","postcoordinationScale":[{"@id":"http://id.who.int/icd/release/11/2019-04/mms/375810888/postcoordinationScale/hasCausingCondition","axisName":"http://id.who.int/icd/schema/hasCausingCondition","requiredPostcoordination":"true","allowMultipleValues":"AllowAlways","scaleEntity":["http://id.who.int/icd/release/11/2019-04/mms/1435254666","http://id.who.int/icd/release/11/2019-04/mms/1630407678","http://id.who.int/icd/release/11/2019-04/mms/1766440644","http://id.who.int/icd/release/11/2019-04/mms/1954798891","http://id.who.int/icd/release/11/2019-04/mms/21500692","http://id.who.int/icd/release/11/2019-04/mms/334423054","http://id.who.int/icd/release/11/2019-04/mms/274880002","http://id.who.int/icd/release/11/2019-04/mms/1296093776","http://id.who.int/icd/release/11/2019-04/mms/868865918","http://id.who.int/icd/release/11/2019-04/mms/1218729044","http://id.who.int/icd/release/11/2019-04/mms/426429380","http://id.who.int/icd/release/11/2019-04/mms/197934298","http://id.who.int/icd/release/11/2019-04/mms/1256772020","http://id.who.int/icd/release/11/2019-04/mms/1639304259","http://id.who.int/icd/release/11/2019-04/mms/1473673350","http://id.who.int/icd/release/11/2019-04/mms/30659757","http://id.who.int/icd/release/11/2019-04/mms/577470983","http://id.who.int/icd/release/11/2019-04/mms/714000734","http://id.who.int/icd/release/11/2019-04/mms/1306203631","http://id.who.int/icd/release/11/2019-04/mms/223744320","http://id.who.int/icd/release/11/2019-04/mms/1843895818","http://id.who.int/icd/release/11/2019-04/mms/435227771","http://id.who.int/icd/release/11/2019-04/mms/850137482","http://id.who.int/icd/release/11/2019-04/mms/1249056269","http://id.who.int/icd/release/11/2019-04/mms/1596590595"]}],"title":{"@language":"en","@value":"Antibiotic resistant Haemophilus influenzae"},"codingNote":{"@language":"en","@value":"In case of multiple resistances, code each one separately if listed below."}}

If you see this output, the api is not running yet

<html>
<head><title>502 Bad Gateway</title></head>
<body bgcolor="white">
<center><h1>502 Bad Gateway</h1></center>
<hr><center>nginx/1.14.2</center>
</body>
</html>