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Added a minimap2 Docker image #2

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merged 1 commit into from
Jul 28, 2023
Merged

Added a minimap2 Docker image #2

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17 changes: 17 additions & 0 deletions docker/minimap2/Dockerfile
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Original file line number Diff line number Diff line change
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FROM continuumio/miniconda3

MAINTAINER Homestar Runner

# copy other resources
COPY ./environment.yml /

# install conda packages
RUN conda env create -f /environment.yml && conda clean -a
ENV PATH=/opt/conda/envs/minimap2/bin/:${PATH}
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/conda/envs/minimap2/lib/

RUN apt-get -y update \
&& apt-get -y install git make cmake protobuf-compiler gcc g++ zlib1g-dev libcurl4-openssl-dev libbz2-dev tree python3-pip liblzma-dev wget curl \
&& apt-get clean

RUN echo "source activate minimap2" > ~/.bashrc
8 changes: 8 additions & 0 deletions docker/minimap2/environment.yml
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name: minimap2
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- minimap2
prefix: /opt/conda/envs/minimap2
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