first steps #8
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| # Continuous integration test of any branch. | |
| name: CI | |
| on: | |
| push: | |
| branches-ignore: | |
| - main | |
| jobs: | |
| # Run Python tests on Github runner | |
| run_tox_test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout github repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| $CONDA/bin/conda install -y -c bioconda womtool | |
| $CONDA/bin/conda config --add channels conda-forge | |
| $CONDA/bin/conda install -y -c conda-forge miniwdl shellcheck | |
| echo "$CONDA/bin" >> $GITHUB_PATH | |
| - name: Test with tox | |
| run: tox | |
| # Build Docker image | |
| build_docker_images: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout github repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - id: 'auth' | |
| name: 'Authenticate to Google Cloud' | |
| uses: 'google-github-actions/auth@v0' | |
| with: | |
| credentials_json: '${{ secrets.GOOGLE_CREDENTIALS }}' | |
| - name: Build Docker images | |
| run: |- | |
| gcloud config set account [email protected] | |
| gcloud auth configure-docker -q us-central1-docker.pkg.dev | |
| ./scripts/build_docker_images.sh $(git rev-parse --abbrev-ref HEAD) | |