Merge pull request #5 from EichlerLab/main #7
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| # Continuous integration and delivery of the main branch. | |
| name: CI/CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| # Release on Github and Docker | |
| release: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Checkout github repo | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| $CONDA/bin/conda install -y -c bioconda womtool | |
| $CONDA/bin/conda config --add channels conda-forge | |
| $CONDA/bin/conda install -y -c conda-forge miniwdl shellcheck | |
| echo "$CONDA/bin" >> $GITHUB_PATH | |
| - name: Test with tox | |
| run: tox | |
| - name: Write commit message | |
| run: git log --format=%B -n 1 ${{ github.event.after }} > release_notes.txt | |
| - name: Github Bumpversion Action | |
| id: version-bump | |
| uses: jasonamyers/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DEFAULT_BUMP: "patch" | |
| - name: Push changes | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| tags: true | |
| - name: Create Github release | |
| id: create_release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: v${{ steps.version-bump.outputs.new_ver }} | |
| release_name: 'v${{ steps.version-bump.outputs.new_ver }}' | |
| body_path: "release_notes.txt" | |
| draft: false | |
| prerelease: false | |
| - id: 'auth' | |
| name: 'Authenticate to Google Cloud' | |
| uses: 'google-github-actions/auth@v0' | |
| with: | |
| credentials_json: '${{ secrets.GOOGLE_CREDENTIALS }}' | |
| - name: Build Docker images | |
| run: |- | |
| gcloud config set account [email protected] | |
| gcloud auth configure-docker -q us-central1-docker.pkg.dev | |
| ./scripts/build_docker_images.sh ${{ steps.version-bump.outputs.new_ver }} | |