add brew install xz for macOS to install HTSlib and pysam

akikuno · Aug 7, 2023 · 736082c · 736082c
1 parent c12346b
commit 736082c
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -20,6 +20,11 @@ jobs:
           python -m pip install --upgrade pip
           python -m pip install pytest
           python -m pip install -r requirements.txt
+      - name: Install xz for macOS to install HTSlib
+        run: |
+          if [ "$RUNNER_OS" == "macOS" ]; then
+              brew install xz
+          fi
       # - name: Set up Conda
       #   uses: conda-incubator/setup-miniconda@v2
       #   with: