separate format_inputs module to cache_checker genome_fetcher, …
#465
Workflow file for this run
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| name: Pytest | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [ '3.8', '3.9', '3.10'] | |
| name: Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # - name: Install xz for macOS to install HTSlib | |
| # run: | | |
| # if [ "$RUNNER_OS" == "macOS" ]; then | |
| # brew install xz htslib | |
| # fi | |
| - name: Install dependencies via pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest | |
| python -m pip install -r requirements.txt | |
| # - name: Set up Conda | |
| # uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # auto-update-conda: true | |
| # channels: conda-forge, bioconda, anaconda | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Install dependencies via conda | |
| # run: | | |
| # conda install --file requirements.txt --yes | |
| - name: Test with pytest | |
| run: | | |
| export PYTHONPATH=./src | |
| python -m pytest tests/ -p no:warnings |