cli-tests #126
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| name: cli-tests | |
| on: | |
| push: | |
| schedule: | |
| - cron: "0 2 * * 1" # The task runs at 2 a.m. every Monday. | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.10'] | |
| name: Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniconda-version: "latest" | |
| activate-environment: test-env | |
| channels: bioconda, conda-forge, defaults, anaconda | |
| - name: Setup conda environment on ubuntu-latest🐧 | |
| if: runner.os == 'Linux' | |
| run: | | |
| conda create -y -n env-dajin2 python=${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| conda activate env-dajin2 | |
| # ========================================== | |
| # Use pip because conda does not support pyproject.toml. | |
| # ========================================== | |
| pip install -U pip pytest | |
| pip install -e . | |
| ########################################## | |
| # Execute tests | |
| ########################################## | |
| - name: Run tests version | |
| run: | | |
| conda activate env-dajin2 | |
| sh tests/test_version.sh |