Reverse Max/min

aghozlane · Jul 27, 2016 · be0b129 · be0b129
1 parent 1a68804
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/README.md b/README.md
@@ -83,8 +83,8 @@ Then, install the databases as follow :
 --minphred      Qvalue must lie between [0-40] (Default minimum qvalue 20)
 --minphredperc  Minimum allowed percentage of correctly called nucleotides [0-100] (Default 80)
 --NbMismatchMapping     Maximum number of mismatch when mapping end-to-end against Human genome and Phi174 genome (Default 1 mismatch is accepted)
---maxoverlap    Minimum overlap when paired reads are considered (Default 200 nt)
---minoverlap    Maximum overlap when paired reads are considered (Default 50 nt)
+--maxoverlap    Maximum overlap when paired reads are considered (Default 200 nt)
+--minoverlap    Minimum overlap when paired reads are considered (Default 50 nt)
 --minampliconlength     Minimum amplicon length (Default 64nt)
 --minotusize    Indicate minimum OTU size (Default 4)
 --prefixdrep    Perform prefix dereplication (Default full length dereplication)

diff --git a/masque.sh b/masque.sh
@@ -109,8 +109,8 @@ display_help() {
 --minphred\tQvalue must lie between [0-40] (Default minimum qvalue 20)
 --minphredperc\tMinimum allowed percentage of correctly called nucleotides [0-100] (Default 80)
 --NbMismatchMapping\tMaximum number of mismatch when mapping end-to-end against Human genome and Phi174 genome (Default 1 mismatch is accepted)
---maxoverlap\tMinimum overlap when paired reads are considered (Default 200 nt)
---minoverlap\tMaximum overlap when paired reads are considered (Default 50 nt)
+--maxoverlap\tMaximum overlap when paired reads are considered (Default 200 nt)
+--minoverlap\tMini overlap when paired reads are considered (Default 50 nt)
 --minampliconlength\tMinimum amplicon length (Default 64nt)
 --minotusize\tIndicate minimum OTU size (Default 4)
 --prefixdrep\tPerform prefix dereplication (Default full length dereplication)