fixes for UPP and compression in ufswm

parm/config/gefs/config.base

@@ -268,10 +268,6 @@ export OUTPUT_GRID="gaussian_grid"
 export WRITE_DOPOST=".true." # WRITE_DOPOST=true, use inline POST
 export WRITE_NSFLIP=".true."
 
-# Override normal post flat files for GEFS
-export FLTFILEGFS="${PARMgfs}/post/gefs/postxconfig-NT-gefs.txt"
-export FLTFILEGFSF00="${PARMgfs}/post/gefs/postxconfig-NT-gefs-f00.txt"
-
 # Microphysics Options: 99-ZhaoCarr, 8-Thompson; 6-WSM6, 10-MG, 11-GFDL
 export imp_physics=8
 

parm/config/gefs/config.ufs

@@ -254,6 +254,25 @@ export ntasks_fv3_gfs
 export ntasks_quilt
 export ntasks_quilt_gfs
 
+# Determine whether to use compression in the write grid component based on resolution
+case ${fv3_res} in
+  "C48" | "C96" | "C192" | "C384")
+    zstandard_level=0
+    ideflate=0
+    quantize_nsd=0
+    ;;
+  "C768" | "C1152" | "C3072")
+    zstandard_level=0
+    ideflate=1
+    quantize_nsd=5
+    ;;
+  *)
+    echo "FATAL ERROR: Unrecognized FV3 resolution ${fv3_res}"
+    exit 15
+    ;;
+esac
+export zstandard_level ideflate quantize_nsd
+
 # Determine whether to use parallel NetCDF based on resolution
 case ${fv3_res} in
   "C48" | "C96" | "C192" | "C384")
@@ -353,7 +372,7 @@ if [[ "${skip_mom6}" == "false" ]]; then
       if [[ ${RUN} == "gfs" || "${RUN}" == "gefs" ]]; then
         MOM6_DIAG_COORD_DEF_Z_FILE="interpolate_zgrid_40L.nc"
         MOM6_DIAG_MISVAL="-1e34"
-      else            
+      else
         MOM6_DIAG_COORD_DEF_Z_FILE="oceanda_zgrid_75L.nc"
         MOM6_DIAG_MISVAL="0.0"
       fi

parm/config/gfs/config.ufs

@@ -356,6 +356,25 @@ export ntasks_fv3_gfs
 export ntasks_quilt_gdas
 export ntasks_quilt_gfs
 
+# Determine whether to use compression in the write grid component based on resolution
+case ${fv3_res} in
+  "C48" | "C96" | "C192" | "C384")
+    zstandard_level=0
+    ideflate=0
+    quantize_nsd=0
+    ;;
+  "C768" | "C1152" | "C3072")
+    zstandard_level=0
+    ideflate=1
+    quantize_nsd=5
+    ;;
+  *)
+    echo "FATAL ERROR: Unrecognized FV3 resolution ${fv3_res}"
+    exit 15
+    ;;
+esac
+export zstandard_level ideflate quantize_nsd
+
 # Determine whether to use parallel NetCDF based on resolution
 case ${fv3_res} in
   "C48" | "C96" | "C192" | "C384")

sorc/link_workflow.sh

@@ -170,12 +170,6 @@ for dir in gfs gefs
 do
   ${LINK_OR_COPY} "${HOMEgfs}/sorc/upp.fd/parm/${dir}" .
 done
-for file in optics_luts_DUST.dat optics_luts_DUST_nasa.dat optics_luts_NITR_nasa.dat \
-    optics_luts_SALT.dat optics_luts_SALT_nasa.dat optics_luts_SOOT.dat optics_luts_SOOT_nasa.dat \
-    optics_luts_SUSO.dat optics_luts_SUSO_nasa.dat optics_luts_WASO.dat optics_luts_WASO_nasa.dat
-do
-  ${LINK_OR_COPY} "${HOMEgfs}/sorc/upp.fd/fix/chem/${file}" .
-done
 for file in ice.csv ocean.csv ocnicepost.nml.jinja2
 do
   ${LINK_OR_COPY} "${HOMEgfs}/sorc/gfs_utils.fd/parm/ocnicepost/${file}" .
@@ -218,7 +212,12 @@ declare -a ufs_templates=("model_configure.IN" "input_global_nest.nml.IN"\
                           "ufs.configure.s2swa.IN" \
                           "ufs.configure.s2swa_esmf.IN" \
                           "ufs.configure.leapfrog_atm_wav.IN" \
-                          "ufs.configure.leapfrog_atm_wav_esmf.IN" )
+                          "ufs.configure.leapfrog_atm_wav_esmf.IN" \
+                          "post_itag_gfs" \  # TODO: Need a GEFS version of this in the UFS-weather-model
+                          "postxconfig-NT-gfs.txt" \  # TODO: Need a GEFS version of this in the UFS-weather-model
+                          "postxconfig-NT-gfs_FH00.txt")  # TODO: Need a GEFS version of this in the UFS-weather-model
+                          # TODO: The above postxconfig files in the UFSWM are not the same as the ones in UPP
+                          # See forecast_predet.sh where the UPP versions are used.  They will need to be replaced with these.
 for file in "${ufs_templates[@]}"; do
   [[ -s "${file}" ]] && rm -f "${file}"
   ${LINK_OR_COPY} "${HOMEgfs}/sorc/ufs_model.fd/tests/parm/${file}" .

ush/forecast_predet.sh

@@ -537,10 +537,16 @@ FV3_predet(){
 
   # Inline UPP fix files
   if [[ "${WRITE_DOPOST:-}" == ".true." ]]; then
-    ${NCP} "${PARMgfs}/post/post_tag_gfs${LEVS}"                                  "${DATA}/itag"
-    ${NCP} "${FLTFILEGFS:-${PARMgfs}/post/gfs/postxconfig-NT-gfs-two.txt}"        "${DATA}/postxconfig-NT.txt"
-    ${NCP} "${FLTFILEGFSF00:-${PARMgfs}/post/gfs/postxconfig-NT-gfs-f00-two.txt}" "${DATA}/postxconfig-NT_FH00.txt"
-    ${NCP} "${POSTGRB2TBL:-${PARMgfs}/post/params_grib2_tbl_new}"                 "${DATA}/params_grib2_tbl_new"
+    ${NCP} "${POSTGRB2TBL:-${PARMgfs}/post/params_grib2_tbl_new}" "${DATA}/params_grib2_tbl_new"
+    ${NCP} "${PARMgfs}/ufs/post_tag_gfs"                          "${DATA}/itag"  # TODO: Need a GEFS version when available in the UFS-weather-model
+    # TODO: These should be replaced with ones from the ufs-weather-model when available there
+    if [[ "${RUN}" =~ "gdas" || "${RUN}" =~ "gfs" ]]; then  # RUN = gdas | enkfgdas | gfs | enkfgfs
+      ${NCP} "${PARMgfs}/post/gfs/postxconfig-NT-gfs-two.txt"     "${DATA}/postxconfig-NT.txt"
+-     ${NCP} "${PARMgfs}/post/gfs/postxconfig-NT-gfs-f00-two.txt" "${DATA}/postxconfig-NT_FH00.txt"
+    elif [[ "${RUN}" == "gefs" ]]; then  # RUN = gefs
+      ${NCP} "${PARMgfs}/post/gefs/postxconfig-NT-gefs.txt"       "${DATA}/postxconfig-NT.txt"
+-     ${NCP} "${PARMgfs}/post/gefs/postxconfig-NT-gefs-f00.txt"   "${DATA}/postxconfig-NT_FH00.txt"
+    fi
   fi
 
 }

ush/parsing_model_configure_FV3.sh

@@ -38,9 +38,9 @@ local NUM_FILES=${NUM_FILES:-2}
 local FILENAME_BASE="'atm' 'sfc'"
 # OUTPUT_GRID
 local OUTPUT_FILE="'${OUTPUT_FILETYPE_ATM}' '${OUTPUT_FILETYPE_SFC}'"
-local ZSTANDARD_LEVEL=0
-local IDEFLATE=0  # netCDF zlib lossless compression (0-9); 0: no compression
-local QUANTIZE_NSD=${QUANTIZE_NSD:-0}  # netCDF compression
+local ZSTANDARD_LEVEL=${zstandard_level:-0}
+local IDEFLATE=${ideflate:-0}  # netCDF zlib lossless compression (0-9); 0: no compression
+local QUANTIZE_NSD=${quantize_nsd:-0}  # netCDF compression
 local ICHUNK2D=$((4*restile))
 local JCHUNK2D=$((2*restile))
 local ICHUNK3D=$((4*restile))