Add test for Canonicalize command

Wimmics · Jul 23, 2024 · 45e0fd7 · 45e0fd7
1 parent 4726d8a
commit 45e0fd7
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diff --git a/corese-command/src/main/java/fr/inria/corese/command/App.java b/corese-command/src/main/java/fr/inria/corese/command/App.java
@@ -1,6 +1,6 @@
 package fr.inria.corese.command;
 
-import fr.inria.corese.command.programs.canonicalize;
+import fr.inria.corese.command.programs.Canonicalize;
 import fr.inria.corese.command.programs.Convert;
 import fr.inria.corese.command.programs.RemoteSparql;
 import fr.inria.corese.command.programs.Shacl;
@@ -9,7 +9,7 @@
 import picocli.CommandLine.Command;
 
 @Command(name = "Corese-command", version = App.version, mixinStandardHelpOptions = true, subcommands = {
-        Convert.class, Sparql.class, Shacl.class, RemoteSparql.class, canonicalize.class
+        Convert.class, Sparql.class, Shacl.class, RemoteSparql.class, Canonicalize.class
 })
 
 public final class App implements Runnable {

diff --git a/...corese/command/programs/canonicalize.java → ...corese/command/programs/Canonicalize.java b/...corese/command/programs/canonicalize.java → ...corese/command/programs/Canonicalize.java
@@ -22,7 +22,7 @@
 import picocli.CommandLine.Spec;
 
 @Command(name = "canonicalize", version = App.version, description = "Canonicalize an RDF file to a specific format.", mixinStandardHelpOptions = true)
-public class canonicalize implements Callable<Integer> {
+public class Canonicalize implements Callable<Integer> {
 
     private final String DEFAULT_OUTPUT_FILE_NAME = "output";
     private final int ERROR_EXIT_CODE_SUCCESS = 0;
@@ -43,7 +43,7 @@ public class canonicalize implements Callable<Integer> {
             "--output-data" }, description = "Output file path. If not provided, the result will be written to standard output.", arity = "0..1", fallbackValue = DEFAULT_OUTPUT_FILE_NAME)
     private Path output;
 
-    @Option(names = { "-r", "-a", "-ca", "-of",
+    @Option(names = { "-a", "-ca", "-r", "-of",
             "--canonical-algo" }, required = true, description = "Canonicalization algorithm to which the input file should be converted. Possible values:\u001b[34m ${COMPLETION-CANDIDATES}\u001b[0m.", defaultValue = "RDFC10SHA256")
     private EnumCanonicAlgo canonicalAlgo;
 
@@ -67,7 +67,7 @@ public class canonicalize implements Callable<Integer> {
 
     private boolean isDefaultOutputName = false;
 
-    public canonicalize() {
+    public Canonicalize() {
     }
 
     @Override

diff --git a/corese-command/src/test/java/fr/inria/corese/command/programs/CanonicalizeTest.java b/corese-command/src/test/java/fr/inria/corese/command/programs/CanonicalizeTest.java
@@ -0,0 +1,185 @@
+package fr.inria.corese.command.programs;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertTrue;
+
+import java.io.IOException;
+import java.io.PrintWriter;
+import java.io.StringWriter;
+import java.nio.file.Paths;
+
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+
+import picocli.CommandLine;
+
+public class CanonicalizeTest {
+
+    private Canonicalize canonicalize = new Canonicalize();
+    private CommandLine cmd = new CommandLine(canonicalize);
+
+    private StringWriter out = new StringWriter();
+    private StringWriter err = new StringWriter();
+
+    private String inputPath = ConvertTest.class
+            .getResource("/fr/inria/corese/command/programs/canonicalize/input/")
+            .getPath();
+    private String referencesPath = CanonicalizeTest.class
+            .getResource("/fr/inria/corese/command/programs/canonicalize/references/")
+            .getPath();
+    private String resultPath = CanonicalizeTest.class
+            .getResource("/fr/inria/corese/command/programs/canonicalize/results/")
+            .getPath();
+
+    @BeforeEach
+    public void setUp() {
+        PrintWriter out = new PrintWriter(this.out);
+        PrintWriter err = new PrintWriter(this.err);
+        cmd.setOut(out);
+        cmd.setErr(err);
+    }
+
+    private String getStringContent(String path) {
+        try {
+            return new String(java.nio.file.Files.readAllBytes(Paths.get(path)));
+        } catch (IOException e) {
+            e.printStackTrace();
+            throw new RuntimeException(e);
+        }
+    }
+
+    @Test
+    public void test1InputFile() {
+        String input = inputPath + "beatles.ttl";
+        String expected = referencesPath + "beatles.nq";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void test1Url() {
+        String input = "https://files.inria.fr/corese/data/unit-test/beatles.ttl";
+        String expected = referencesPath + "beatles.nq";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void test1Directory() {
+        String input = inputPath;
+        String expected = referencesPath + "beatles.nq";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void test1DirectoryRecursive() {
+        String input = inputPath;
+        String expected = referencesPath + "recursive.nq";
+        String output = resultPath + "recursive.nq";
+
+        String[] args = { "-i", input, "-a", "rdfc-1.0-sha256", "-o", output, "-R" };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void testMultipleSources() {
+        String input1 = inputPath + "beatles.ttl";
+        String input2 = Paths.get(inputPath, "recursive-level1", "person.ttl").toString();
+        String expected = referencesPath + "multiple.nq";
+        String output = resultPath + "multiple.nq";
+
+        String[] args = { "-i", input1, input2, "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void testInputFormat() {
+        String input = inputPath + "beatles.ttl";
+        String expected = referencesPath + "beatles.nq";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-f", "text/turtle", "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void testInputBadFormat() {
+        String input = inputPath + "beatles.ttl";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-f", "rdfxml", "-a", "rdfc-1.0-sha256", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(1, exitCode);
+        assertEquals("", out.toString());
+        assertTrue(err.toString().contains("Failed to parse RDF file."));
+    }
+
+    @Test
+    public void testSha384() {
+        String input = inputPath + "beatles.ttl";
+        String expected = referencesPath + "beatles-sha384.nq";
+        String output = resultPath + "beatles-sha384.nq";
+
+        String[] args = { "-i", input, "-a", "rdfc-1.0-sha384", "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+    @Test
+    public void testDefaultAlgorithm() {
+        String input = inputPath + "beatles.ttl";
+        String expected = referencesPath + "beatles.nq";
+        String output = resultPath + "beatles.nq";
+
+        String[] args = { "-i", input, "-o", output };
+        int exitCode = cmd.execute(args);
+
+        assertEquals(0, exitCode);
+        assertEquals("", err.toString());
+        assertEquals("", out.toString());
+        assertEquals(getStringContent(expected), getStringContent(output));
+    }
+
+}
diff --git a/...ommand/src/test/resources/fr/inria/corese/command/programs/canonicalize/input/beatles.ttl b/...ommand/src/test/resources/fr/inria/corese/command/programs/canonicalize/input/beatles.ttl
@@ -0,0 +1,42 @@
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+@prefix ns1: <http://example.com/> .
+@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+
+
+<http://example.com/Love_Me_Do> ns1:length 125 ;
+ns1:name "Love Me Do" ;
+ns1:writer ns1:John_Lennon ;
+ns1:writer ns1:Paul_McCartney ;
+rdf:type ns1:Song .
+
+ns1:The_Beatles ns1:member ns1:John_Lennon ;
+ns1:member ns1:Paul_McCartney ;
+ns1:member ns1:Ringo_Starr ;
+ns1:member ns1:George_Harrison ;
+ns1:name "The Beatles" ;
+rdf:type ns1:Band .
+
+ns1:Please_Please_Me ns1:artist ns1:The_Beatles ;
+ns1:date "1963-03-22"^^xsd:date ;
+ns1:name "Please Please Me" ;
+ns1:track ns1:Love_Me_Do ;
+rdf:type ns1:Album .
+
+ns1:George_Harrison rdf:type ns1:SoloArtist .
+
+ns1:Ringo_Starr rdf:type ns1:SoloArtist .
+
+ns1:John_Lennon rdf:type ns1:SoloArtist .
+
+ns1:Paul_McCartney rdf:type ns1:SoloArtist .
+
+ns1:McCartney ns1:artist ns1:Paul_McCartney ;
+ns1:date "1970-04-17"^^xsd:date ;
+ns1:name "McCartney" ;
+rdf:type ns1:Album .
+
+ns1:Imagine ns1:artist ns1:John_Lennon ;
+ns1:date "1971-10-11"^^xsd:date ;
+ns1:name "Imagine" ;
+rdf:type ns1:Album .
+
diff --git a/...resources/fr/inria/corese/command/programs/canonicalize/input/recursive-level1/person.ttl b/...resources/fr/inria/corese/command/programs/canonicalize/input/recursive-level1/person.ttl
@@ -0,0 +1,23 @@
+@prefix ex: <http://example.org/ns#> .
+@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+
+ex:Alice ex:ssn "987-65-4323" ;
+    ex:worksFor ex:Haribo, ex:KitKat ;
+    rdf:type ex:Person .
+
+ex:Bob ex:ssn "124-35-6789" ;
+    ex:worksFor ex:Twitch ;
+    rdf:type ex:Person .
+
+ex:Calvin ex:ssn "648-67-6545" ;
+    ex:worksFor ex:UntypedCompany ;
+    rdf:type ex:Person .
+
+ex:Haribo rdf:type ex:Company .
+
+ex:KitKat rdf:type ex:Company .
+
+ex:Twitch rdf:type ex:Company .
+
+ex:UntypedCompany rdf:type ex:Company .
+
diff --git a/...test/resources/fr/inria/corese/command/programs/canonicalize/references/beatles-sha384.nq b/...test/resources/fr/inria/corese/command/programs/canonicalize/references/beatles-sha384.nq
@@ -0,0 +1,28 @@
+<http://example.com/George_Harrison> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Imagine> <http://example.com/artist> <http://example.com/John_Lennon> .
+<http://example.com/Imagine> <http://example.com/date> "1971-10-11"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Imagine> <http://example.com/name> "Imagine" .
+<http://example.com/Imagine> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/John_Lennon> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Love_Me_Do> <http://example.com/length> "125"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<http://example.com/Love_Me_Do> <http://example.com/name> "Love Me Do" .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/John_Lennon> .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/Paul_McCartney> .
+<http://example.com/Love_Me_Do> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Song> .
+<http://example.com/McCartney> <http://example.com/artist> <http://example.com/Paul_McCartney> .
+<http://example.com/McCartney> <http://example.com/date> "1970-04-17"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/McCartney> <http://example.com/name> "McCartney" .
+<http://example.com/McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Paul_McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Please_Please_Me> <http://example.com/artist> <http://example.com/The_Beatles> .
+<http://example.com/Please_Please_Me> <http://example.com/date> "1963-03-22"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Please_Please_Me> <http://example.com/name> "Please Please Me" .
+<http://example.com/Please_Please_Me> <http://example.com/track> <http://example.com/Love_Me_Do> .
+<http://example.com/Please_Please_Me> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Ringo_Starr> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/George_Harrison> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/John_Lennon> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Paul_McCartney> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Ringo_Starr> .
+<http://example.com/The_Beatles> <http://example.com/name> "The Beatles" .
+<http://example.com/The_Beatles> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Band> .
diff --git a/...nd/src/test/resources/fr/inria/corese/command/programs/canonicalize/references/beatles.nq b/...nd/src/test/resources/fr/inria/corese/command/programs/canonicalize/references/beatles.nq
@@ -0,0 +1,28 @@
+<http://example.com/George_Harrison> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Imagine> <http://example.com/artist> <http://example.com/John_Lennon> .
+<http://example.com/Imagine> <http://example.com/date> "1971-10-11"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Imagine> <http://example.com/name> "Imagine" .
+<http://example.com/Imagine> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/John_Lennon> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Love_Me_Do> <http://example.com/length> "125"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<http://example.com/Love_Me_Do> <http://example.com/name> "Love Me Do" .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/John_Lennon> .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/Paul_McCartney> .
+<http://example.com/Love_Me_Do> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Song> .
+<http://example.com/McCartney> <http://example.com/artist> <http://example.com/Paul_McCartney> .
+<http://example.com/McCartney> <http://example.com/date> "1970-04-17"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/McCartney> <http://example.com/name> "McCartney" .
+<http://example.com/McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Paul_McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Please_Please_Me> <http://example.com/artist> <http://example.com/The_Beatles> .
+<http://example.com/Please_Please_Me> <http://example.com/date> "1963-03-22"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Please_Please_Me> <http://example.com/name> "Please Please Me" .
+<http://example.com/Please_Please_Me> <http://example.com/track> <http://example.com/Love_Me_Do> .
+<http://example.com/Please_Please_Me> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Ringo_Starr> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/George_Harrison> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/John_Lennon> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Paul_McCartney> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Ringo_Starr> .
+<http://example.com/The_Beatles> <http://example.com/name> "The Beatles" .
+<http://example.com/The_Beatles> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Band> .
diff --git a/...d/src/test/resources/fr/inria/corese/command/programs/canonicalize/references/multiple.nq b/...d/src/test/resources/fr/inria/corese/command/programs/canonicalize/references/multiple.nq
@@ -0,0 +1,42 @@
+<http://example.com/George_Harrison> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Imagine> <http://example.com/artist> <http://example.com/John_Lennon> .
+<http://example.com/Imagine> <http://example.com/date> "1971-10-11"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Imagine> <http://example.com/name> "Imagine" .
+<http://example.com/Imagine> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/John_Lennon> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Love_Me_Do> <http://example.com/length> "125"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<http://example.com/Love_Me_Do> <http://example.com/name> "Love Me Do" .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/John_Lennon> .
+<http://example.com/Love_Me_Do> <http://example.com/writer> <http://example.com/Paul_McCartney> .
+<http://example.com/Love_Me_Do> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Song> .
+<http://example.com/McCartney> <http://example.com/artist> <http://example.com/Paul_McCartney> .
+<http://example.com/McCartney> <http://example.com/date> "1970-04-17"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/McCartney> <http://example.com/name> "McCartney" .
+<http://example.com/McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Paul_McCartney> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/Please_Please_Me> <http://example.com/artist> <http://example.com/The_Beatles> .
+<http://example.com/Please_Please_Me> <http://example.com/date> "1963-03-22"^^<http://www.w3.org/2001/XMLSchema#date> .
+<http://example.com/Please_Please_Me> <http://example.com/name> "Please Please Me" .
+<http://example.com/Please_Please_Me> <http://example.com/track> <http://example.com/Love_Me_Do> .
+<http://example.com/Please_Please_Me> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Album> .
+<http://example.com/Ringo_Starr> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/SoloArtist> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/George_Harrison> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/John_Lennon> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Paul_McCartney> .
+<http://example.com/The_Beatles> <http://example.com/member> <http://example.com/Ringo_Starr> .
+<http://example.com/The_Beatles> <http://example.com/name> "The Beatles" .
+<http://example.com/The_Beatles> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.com/Band> .
+<http://example.org/ns#Alice> <http://example.org/ns#ssn> "987-65-4323" .
+<http://example.org/ns#Alice> <http://example.org/ns#worksFor> <http://example.org/ns#Haribo> .
+<http://example.org/ns#Alice> <http://example.org/ns#worksFor> <http://example.org/ns#KitKat> .
+<http://example.org/ns#Alice> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Person> .
+<http://example.org/ns#Bob> <http://example.org/ns#ssn> "124-35-6789" .
+<http://example.org/ns#Bob> <http://example.org/ns#worksFor> <http://example.org/ns#Twitch> .
+<http://example.org/ns#Bob> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Person> .
+<http://example.org/ns#Calvin> <http://example.org/ns#ssn> "648-67-6545" .
+<http://example.org/ns#Calvin> <http://example.org/ns#worksFor> <http://example.org/ns#UntypedCompany> .
+<http://example.org/ns#Calvin> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Person> .
+<http://example.org/ns#Haribo> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Company> .
+<http://example.org/ns#KitKat> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Company> .
+<http://example.org/ns#Twitch> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Company> .
+<http://example.org/ns#UntypedCompany> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://example.org/ns#Company> .