DEV: update curl commands to fix #43

Vini2 · Mar 15, 2024 · 8ae0330 · 8ae0330
1 parent f83086d
commit 8ae0330
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/phables/workflow/install.smk b/phables/workflow/install.smk
@@ -40,7 +40,7 @@ rule phrogs_mmseqs_download:
         os.path.join("envs", "curl.yaml")
     shell:
         """
-            curl -Lo {params.file} {params.url}
+            curl -Lko {params.file} {params.url}
             tar -xf {params.file} -C {params.db_path}
             rm -rf {params.file}
         """
@@ -54,7 +54,7 @@ rule smg_hmm_download:
         os.path.join("envs", "curl.yaml")
     shell:
         """
-            curl -Lo {output} {params.url}
+            curl -Lko {output} {params.url}
         """
 
 rule phrog_annot_download:
@@ -66,5 +66,5 @@ rule phrog_annot_download:
         os.path.join("envs", "curl.yaml")
     shell:
         """
-            curl -Lo {output} {params.url}
+            curl -Lko {output} {params.url}
         """